Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0851
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    27   1.9  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.8  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    25   7.8  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    25   7.8  

>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 441 SLSKYSEYMLNSFIPIRICLIFGRCMN 361
           S+ K  EY    ++P  ICLI   C+N
Sbjct: 195 SIEKIREYHKEMYVPSNICLIVTGCIN 221


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1067

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/30 (30%), Positives = 23/30 (76%)
 Frame = +1

Query: 520  SLYLVCQLSSQD*TLKFQNLIRRFKIYFSQ 609
            S+ L+CQ S++D + ++ N++++ + +F+Q
Sbjct: 917  SMGLLCQFSTEDLSSEYLNILQKLQPFFTQ 946


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 249 PLPIILTVTVRYFMTSAIVYRPSSGFVFMA-GKFIKG 356
           PLP  L+V +R+F+T  I + P++  +F++   FI G
Sbjct: 354 PLPCFLSVQLRWFIT-YIFHPPAAMILFISCTSFISG 389


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 194 KVTHKQEINWERHFILSFSSAYHINSDSEVLHD 292
           K+  KQ +  +  F++  SS  HI+S +E+L D
Sbjct: 227 KLDLKQIVKSKNKFVILHSSTGHIHSLNEILKD 259


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 297 AIVYRPSSGFVFMAGKFIKGAGSYTVQKLNKC 392
           A+ + P   F+FM   ++ GA    V ++ KC
Sbjct: 152 AVGFDPKKTFIFMNSTYVGGAFYQNVVRIAKC 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,299
Number of Sequences: 5004
Number of extensions: 56020
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)