Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0850
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55F59 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_Q7RBE8 Cluster: Latent nuclear antigen-related; n=1; Pl...    33   8.8  

>UniRef50_Q55F59 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 825

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 25/89 (28%), Positives = 47/89 (52%)
 Frame = +3

Query: 249 DKLYIEKRFNFKIISIS*SPIELFNCIEQLKKDI*DIIEAYNRTNHCENMLKDIT*IERS 428
           ++L +EK+FN K +    +  EL N  ++L+ +  +++  YN TN+  N+L ++    +S
Sbjct: 661 NQLLLEKQFNQKTLQ---NWDELQNEYKKLELNYNNLLNYYNSTNNSNNLLINLKNNFKS 717

Query: 429 DFNYFHKKNCLNNTI**FLNLMLTKHSKS 515
             N  +  N  NN    F N +++  S S
Sbjct: 718 SINNNNNNNNNNNN---FKNSLISSSSSS 743


>UniRef50_Q7RBE8 Cluster: Latent nuclear antigen-related; n=1;
           Plasmodium yoelii yoelii|Rep: Latent nuclear
           antigen-related - Plasmodium yoelii yoelii
          Length = 139

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = +3

Query: 240 INSDKLYIEKRFNFKIISIS*SPIELFNCIEQLKKDI*DIIEAYNRTNHCENMLKDIT*I 419
           IN ++L  E + N+KI+      +E+   +   KK+  DI  +Y    HCE M      +
Sbjct: 66  INFEQLQTEYQSNYKILDDEKYNVEINKELCISKKNNQDINPSYQANCHCEKMK-----V 120

Query: 420 ERSDFNYFHKKNCLNN 467
           E+  +N   KKN + N
Sbjct: 121 EKXVYNDNKKKNIIQN 136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,430,313
Number of Sequences: 1657284
Number of extensions: 9529620
Number of successful extensions: 21580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21573
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)