Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0850
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    25   0.78 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.2  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   7.2  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   7.2  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   9.6  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = -3

Query: 452 FFVKIIKVASFDLGNVF*HVFTMISSVICFNDISNIF 342
           +F++++ +    +G +  H+F ++   +  ND+  IF
Sbjct: 56  YFLRMVLIDLLIVGCILKHIFNILMKNVTLNDVVFIF 92


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 327 IEQLKKDI*DIIEAYNRTNH 386
           +E L++ I  ++E Y RT H
Sbjct: 335 VEMLREKIYGVLEEYTRTTH 354


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 183 SKPQN*INKYDLNCVLKTFINS 248
           SKP    NK D  CV K+ +NS
Sbjct: 256 SKPFQ-CNKCDYTCVNKSMLNS 276


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 346 SFLSCSIQLKSSMGLQLMEMIL 281
           S L+C IQ   SMG  L+++ +
Sbjct: 55  SRLACEIQFVRSMGYYLIQIYI 76


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 183 SKPQN*INKYDLNCVLKTFINS 248
           SKP    NK D  CV K+ +NS
Sbjct: 14  SKPFQ-CNKCDYTCVNKSMLNS 34


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +2

Query: 551 NKTIFKGFFFNIQNYLIINIEF 616
           N+ +FK     +  YL++ ++F
Sbjct: 393 NRNLFKSLLATMVTYLVVLLQF 414


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,703
Number of Sequences: 336
Number of extensions: 2779
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)