Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0850
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   1.5  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.4  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   4.5  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 379  VLLYASMISQISFLSCSIQLKSSMGLQLMEMIL 281
            +L YAS I  +  L C+I + SS+G + +  +L
Sbjct: 1309 ILAYASKIENLLVLQCAISVVSSLGHEHISCVL 1341


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 234 TFINSDKLYIEKRFNFKIISIS*SPIELFNCIEQL 338
           T + S  L ++K  N+K+   S +P E  NC+ +L
Sbjct: 741 TGVQSPPLILKKHDNWKVSLSSRAPSEAINCLSKL 775


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 315 LFNCIEQLKKDI*DIIEAYNRTNHCENMLKD 407
           L N +EQ  KD  D +EAY+R+NH    L +
Sbjct: 624 LKNRLEQELKDY-DALEAYHRSNHVLTWLSE 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,642
Number of Sequences: 5004
Number of extensions: 46255
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)