Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0850
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417...    28   8.1  

>03_02_0757 -
           10940993-10941112,10941218-10941418,10941661-10941795,
           10941948-10942088,10942214-10942405,10942624-10942748,
           10942828-10942903,10943024-10943173,10943467-10943856,
           10944078-10944227,10944430-10944710,10945034-10945230,
           10945836-10946035,10946422-10946469,10946566-10946688,
           10946771-10946882,10946988-10947103,10947526-10947660
          Length = 963

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 547 FFHWDHSYLFLDFECFVNIKLRNY 476
           +F  +HSY+F+DF+  V   L NY
Sbjct: 164 WFMKEHSYIFVDFDEIVQSVLENY 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,256,121
Number of Sequences: 37544
Number of extensions: 211993
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)