Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0849
         (688 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1; ...   103   4e-21
UniRef50_P62593 Cluster: Beta-lactamase TEM precursor; n=261; ro...    67   3e-10
UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp. ...    62   1e-08
UniRef50_Q1UYY9 Cluster: Putative uncharacterized protein; n=1; ...    42   0.011
UniRef50_Q92854 Cluster: Semaphorin-4D precursor; n=26; Euteleos...    33   4.9  
UniRef50_Q4P5T7 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 99

 Score =  103 bits (247), Expect = 4e-21
 Identities = 48/68 (70%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
 Frame = +2

Query: 440 GEMCAEP-LFVYFSKYIQICIRS*TITLINASIILKKEEYEYSTFPCRPYSLFCGILPSC 616
           G+    P LF++ + +  +     TITLINASIILKKEEYEYSTFPCRPYSLFCGILPSC
Sbjct: 28  GKCARNPYLFIFLNTFKYVSAHE-TITLINASIILKKEEYEYSTFPCRPYSLFCGILPSC 86

Query: 617 FCSPRNAG 640
           FCSPRNAG
Sbjct: 87  FCSPRNAG 94



 Score = 71.3 bits (167), Expect = 2e-11
 Identities = 37/76 (48%), Positives = 39/76 (51%)
 Frame = +3

Query: 429 WHFSGKCARNPYLFIFLNTFKYVSAHEQ*P**MLQ*Y*KRKSMSIQHFRVALIPFFAAFC 608
           WHFSGKCARNPYLFIFLNTFKYVSAHE           K++      F       F    
Sbjct: 24  WHFSGKCARNPYLFIFLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFCGIL 83

Query: 609 LPVFAHPETLVESKRC 656
              F  P    ESKRC
Sbjct: 84  PSCFCSPRNAGESKRC 99


>UniRef50_P62593 Cluster: Beta-lactamase TEM precursor; n=261;
           root|Rep: Beta-lactamase TEM precursor - Escherichia
           coli
          Length = 286

 Score = 67.3 bits (157), Expect = 3e-10
 Identities = 30/32 (93%), Positives = 31/32 (96%)
 Frame = +3

Query: 555 MSIQHFRVALIPFFAAFCLPVFAHPETLVESK 650
           MSIQHFRVALIPFFAAFCLPVFAHPETLV+ K
Sbjct: 1   MSIQHFRVALIPFFAAFCLPVFAHPETLVKVK 32


>UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp.
           SS|Rep: LacZ alpha peptide - Beggiatoa sp. SS
          Length = 73

 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 37/71 (52%), Positives = 37/71 (52%)
 Frame = -3

Query: 425 DAPCSGALSAAGVVVTRSVXXXXXXXXXXXXXXXXXXXXXXXAGFPRQALNRGLPLGSDL 246
           DAPCSGALSAAGVVVTRSV                       AGFPRQALNRGLPLG   
Sbjct: 2   DAPCSGALSAAGVVVTRSVTATLASALAPAPFAFFPSFLATFAGFPRQALNRGLPLGFRF 61

Query: 245 VLYGTSTPKNL 213
                  PK L
Sbjct: 62  SALRHLDPKKL 72


>UniRef50_Q1UYY9 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Pelagibacter ubique HTCC1002|Rep: Putative
           uncharacterized protein - Candidatus Pelagibacter ubique
           HTCC1002
          Length = 26

 Score = 42.3 bits (95), Expect = 0.011
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -2

Query: 639 PAFLGEQKQEGKMPQKRE 586
           PAFLGEQKQEGKMPQKRE
Sbjct: 9   PAFLGEQKQEGKMPQKRE 26


>UniRef50_Q92854 Cluster: Semaphorin-4D precursor; n=26;
           Euteleostomi|Rep: Semaphorin-4D precursor - Homo sapiens
           (Human)
          Length = 862

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 641 HQRFW-VSKNRKAKCRKKGNKGDTEMLN 561
           H+ +W VS+++KAKC +KG    TE LN
Sbjct: 83  HEVYWKVSEDKKAKCAEKGKSKQTECLN 110


>UniRef50_Q4P5T7 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 779

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 393 GCGGYAQRDRYTCQRPSARSFRFLPFLSRHVRRLSPSSSKSG 268
           G GGY+QR +    R S R+F   P L R + R    S +SG
Sbjct: 292 GSGGYSQRHKSASSRESIRTFFPAPSLPRLISRPGSQSRESG 333


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,350,185
Number of Sequences: 1657284
Number of extensions: 13152718
Number of successful extensions: 31291
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31282
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)