Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0849
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    27   9.5  
U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division c...    27   9.5  
AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14 phosph...    27   9.5  

>U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical
           protein T14B4.1 protein.
          Length = 1146

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 481 IHSNMYPLMNNNPDKCFNNIEKGRV*VFNISVSPLFPFLR 600
           I S + P +NNN D  + N+EKGR+  F I +  +F  +R
Sbjct: 179 ITSLIIPNLNNN-DVFWRNLEKGRMDAFLIQLGSMFNSIR 217


>Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical
           protein T03E6.6 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 347 GRWQV*RSRCA*PPHPPRLMRRYRARQVALFGEMCAEPLFVYFSKYIQI 493
           G W V R RC  PP    L    R  +  +F EM ++ +F Y +  + I
Sbjct: 201 GLW-VPRKRCNYPPGYTELQYAIRVGRKIIFTEMMSQTIFAYLNGSLNI 248


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 532 NNIEKGRV*VFNISVSPLFPFLRHFAFLFLLT 627
           N + +G + VF+I++S +FP    FAFL +LT
Sbjct: 472 NVVVQGVLDVFSINIS-IFPLTAGFAFLHILT 502


>U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division
           cycle related protein14, isoform b protein.
          Length = 1063

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 536 ILKKEEYEYS-TFPCRPYSLFCGILPSCFCSPR 631
           I+K+E+  +  T  C   +   GILP CF  PR
Sbjct: 880 IIKEEDIPFEETVECSSTTAVNGILPKCFRQPR 912


>AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14
           phosphatase isoform B protein.
          Length = 1063

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 536 ILKKEEYEYS-TFPCRPYSLFCGILPSCFCSPR 631
           I+K+E+  +  T  C   +   GILP CF  PR
Sbjct: 880 IIKEEDIPFEETVECSSTTAVNGILPKCFRQPR 912


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,252,397
Number of Sequences: 27780
Number of extensions: 316337
Number of successful extensions: 769
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)