Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0848
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3A1I8 Cluster: Putative uncharacterized protein; n=1; ...    36   0.72 
UniRef50_Q9Y6J0 Cluster: Calcineurin-binding protein Cabin 1; n=...    33   5.1  

>UniRef50_Q3A1I8 Cluster: Putative uncharacterized protein; n=1;
           Pelobacter carbinolicus DSM 2380|Rep: Putative
           uncharacterized protein - Pelobacter carbinolicus
           (strain DSM 2380 / Gra Bd 1)
          Length = 276

 Score = 36.3 bits (80), Expect = 0.72
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = -1

Query: 491 LKILLKVYITVIVIGC*FN*GIFFSLHLRTIGTTVKTIVTFLSVFYGDIS 342
           L+I L ++ +V+++G     G  F+ HL  I     TIVT  +V YGDIS
Sbjct: 10  LRIYLAIFCSVMILG---TVGFMFAEHLSVIDAIYFTIVTIATVGYGDIS 56


>UniRef50_Q9Y6J0 Cluster: Calcineurin-binding protein Cabin 1; n=39;
           Eukaryota|Rep: Calcineurin-binding protein Cabin 1 -
           Homo sapiens (Human)
          Length = 2220

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 195 IRCGPDHYLCIINIVFVLFTIQYLPKKICLY 287
           +RC PDH+ C+ N++ VL+T+       CLY
Sbjct: 151 LRCNPDHWPCLDNLITVLYTLS--DYTTCLY 179


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 689,685,243
Number of Sequences: 1657284
Number of extensions: 13816201
Number of successful extensions: 25461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25455
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)