Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0848
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    26   5.9  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   7.8  

>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +1

Query: 388 TVVPIVRKCNEKKIP*LN*QPITITVM*TFNNILSHTIKVSSYEKIYLFGHAA*APIKKF 567
           T+  I+   N  K   L  Q I +T +  F + +S T + + +   +LF HA   P KK 
Sbjct: 113 TLPDIISTVNNDKSTCLIIQVIDVTEV-IFQDFVSAT-QYTHFPVFHLFTHADVLPPKKP 170

Query: 568 YW 573
           YW
Sbjct: 171 YW 172


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 534 WSCSVSTHKKVLLELVYW 587
           W C V ++ K  ++L YW
Sbjct: 133 WECEVDSNNKTTIDLKYW 150


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 97   YYVLSKIDKFRLWYHVKMTDKKRAREKTYRHFLSGVDPTITY 222
            YY+LS+   F  W H K   K+R   +    F+  +  T T+
Sbjct: 962  YYILSESSSFDRWMHGK--HKERGTTRKLEDFVMQLQRTSTH 1001


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,512
Number of Sequences: 5004
Number of extensions: 65469
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)