Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0848
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0481 - 9772783-9773985                                           31   0.87 
09_02_0477 - 9737851-9739356                                           29   3.5  
06_01_0688 - 5022703-5022805,5023615-5023694,5024305-5024381,502...    28   6.2  

>09_02_0481 - 9772783-9773985
          Length = 400

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = +1

Query: 445 QPITITVM*TFNNILSHTIKVSSYEKIYLFGHAA*APIKKFYWN*FIGPVAFNFGPVCKC 624
           +P  + +M   +  L   I+ S    I  F H   AP  KF WN  +GP A+  GP+C  
Sbjct: 113 EPSAVRMMMELDGKLGKAIEESHGLIINTF-HGLEAPYIKF-WNEHVGPRAWPIGPLCLA 170

Query: 625 MKA 633
             A
Sbjct: 171 QSA 173


>09_02_0477 - 9737851-9739356
          Length = 501

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 538 HAA*APIKKFYWN*FIGPVAFNFGPVCKCMKA 633
           H   AP  KF WN  +GP A+  GP+C    A
Sbjct: 256 HGLEAPYIKF-WNEHVGPRAWPIGPLCLAQPA 286


>06_01_0688 -
           5022703-5022805,5023615-5023694,5024305-5024381,
           5024670-5024816,5025654-5025876
          Length = 209

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 225 IINIVFVLFTIQYLPKKICLYITLTYISTWLENTRIL 335
           +I +V +LF   +L  KICL  T T     LEN+R++
Sbjct: 161 VIGVVLMLF---WLKNKICLIHTFTKQDATLENSRLV 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,448,133
Number of Sequences: 37544
Number of extensions: 337081
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)