Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0848
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 29   4.8  
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)                29   4.8  
SB_8343| Best HMM Match : TPR_1 (HMM E-Value=3.1e-10)                  28   8.3  

>SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 819

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 273 KICLYITLTYISTWLENTRILLYRNIS 353
           K+C  I LTY+ TWL +   ++ R++S
Sbjct: 508 KVCCGIGLTYVMTWLPSGITIIARSLS 534


>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
          Length = 726

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 273 KICLYITLTYISTWLENTRILLYRNIS 353
           K+C  I LTY+ TWL +   ++ R++S
Sbjct: 124 KVCCGIGLTYVMTWLPSGITIIARSLS 150


>SB_8343| Best HMM Match : TPR_1 (HMM E-Value=3.1e-10)
          Length = 225

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 195 IRCGPDHYLCIINIVFVLFTI 257
           +RC P H+LC+  +  VL+ I
Sbjct: 125 LRCNPKHWLCLSQLCSVLYAI 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,485,455
Number of Sequences: 59808
Number of extensions: 437130
Number of successful extensions: 771
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)