Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0847
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.9  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.5  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   4.5  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    26   5.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.8  

>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 446 NSARDRYTVPWGFNGFINYI 387
           NS  DRYT+P+   G I+Y+
Sbjct: 339 NSGSDRYTIPFFLQGNIDYV 358


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 217 FSVTGENISFA--ISSTYQFYLRVTSSATSEDINLDYFSNKAKLM 345
           F VT +++ F   +S  Y+FY     ++  E +   + SN++ L+
Sbjct: 27  FKVTSKDLGFVDQVSEEYEFYTYPKKASEVESVTETFQSNRSSLV 71


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 7   EHLFPARFHISPDRCSLVAAAAPHLET*ICIFLL 108
           E  +  +FHISPD    +  A  H    +C  LL
Sbjct: 593 ERYYEQKFHISPDEPEKIREAVKHYVHGLCWVLL 626


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 271 YLRVTSSATSEDINLDYFSNKAK 339
           Y+RV S+    +INL YF + AK
Sbjct: 505 YVRVRSNMAVSNINLGYFEDAAK 527


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 193  LIYYTYVLFSVTGENISFAISSTYQFYLRVTSSATSEDINLDYFS 327
            +IY  YV+F+ T  +I    SS       + S + S DI   ++S
Sbjct: 2087 MIYPPYVIFNHTDLSIQVTSSSPNSIRYTIPSGSYSNDIKPYFYS 2131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,091
Number of Sequences: 5004
Number of extensions: 51482
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)