Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0846
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.0  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   9.0  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   9.0  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 274 YNNDILCSLCQYSSYMFIKNYVEPEPAV 357
           YN D+ C+  Q   Y+ + N   P P +
Sbjct: 365 YNQDVSCTHYQNPEYISVVNPESPYPQI 392


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 574 LLPITESYFLYINQPINCKLLFK-YSMFFQISM 479
           L+ I  SYF YI     CK++ + +S  F +++
Sbjct: 382 LINIFASYFAYIFGKFACKIMIQGFSYAFPVNL 414


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 574 LLPITESYFLYINQPINCKLLFK-YSMFFQISM 479
           L+ I  SYF YI     CK++ + +S  F +++
Sbjct: 382 LINIFASYFAYIFGKFACKIMIQGFSYAFPVNL 414


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 574 LLPITESYFLYINQPINCKLLFK-YSMFFQISM 479
           L+ I  SYF YI     CK++ + +S  F +++
Sbjct: 382 LINIFASYFAYIFGKFACKIMIQGFSYAFPVNL 414


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 574 LLPITESYFLYINQPINCKLLFK-YSMFFQISM 479
           L+ I  SYF YI     CK++ + +S  F +++
Sbjct: 382 LINIFASYFAYIFGKFACKIMIQGFSYAFPVNL 414


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 661 WFYPYAALYLEDQSLHCK 608
           W+ PY   YL++ +L+ K
Sbjct: 37  WYNPYYYQYLQNAALYHK 54


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 271 LLVTLSCCYISSLCVILFN 215
           LL  L  C++ S C+ +FN
Sbjct: 217 LLYRLLRCWLISKCIYVFN 235


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 271 LLVTLSCCYISSLCVILFN 215
           LL  L  C++ S C+ +FN
Sbjct: 217 LLYRLLRCWLISKCIYVFN 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,381
Number of Sequences: 336
Number of extensions: 2720
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)