Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0846
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0511 + 18435745-18436499,18436624-18436742,18436788-184373...    28   7.6  
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    28   7.6  

>10_08_0511 +
           18435745-18436499,18436624-18436742,18436788-18437372,
           18438534-18438667,18439128-18439148,18439656-18439739,
           18439832-18440077,18440763-18440925,18441024-18441066,
           18441392-18441773,18442212-18442267,18442351-18442417,
           18442542-18442721
          Length = 944

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 56  ETGSMLESTSHATVRHSI-KFDYVDELIQMLKDPLNYGLFLDDYSANILLNELLVKKNYT 232
           E+G+ +E +++  + H + K    D+ +QM ++     L L+  + NI+++ LL      
Sbjct: 361 ESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRND 420

Query: 233 QAADI 247
           +A D+
Sbjct: 421 EAKDL 425


>08_02_1143 + 24659105-24659386,24660171-24660272,24661259-24661521,
            24661775-24661874,24662080-24662238,24662327-24663147,
            24663299-24663618,24665831-24667398
          Length = 1204

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 86   HATVRHSIKFDYVDELIQMLKDPLNYGLFLDDYSANILL 202
            +AT++  ++    DE++Q+ +    YG+ LDD S N ++
Sbjct: 946  NATMKVLLRARLFDEVLQLFESSETYGVELDDISYNTVV 984


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,298,082
Number of Sequences: 37544
Number of extensions: 218000
Number of successful extensions: 383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)