Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0846
         (662 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87453-1|BAA13394.1|  415|Homo sapiens KIAA0264 protein.               46   2e-04
BC064902-1|AAH64902.1|  414|Homo sapiens mitochondrial ribosomal...    46   2e-04

>D87453-1|BAA13394.1|  415|Homo sapiens KIAA0264 protein.
          Length = 415

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 17/56 (30%), Positives = 34/56 (60%)
 Frame = +2

Query: 80  TSHATVRHSIKFDYVDELIQMLKDPLNYGLFLDDYSANILLNELLVKKNYTQAADI 247
           T H  +R  +K+D  D+ +  L + + YG+F D+++ N+L++  + K+NY  A  +
Sbjct: 109 TIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSV 164


>BC064902-1|AAH64902.1|  414|Homo sapiens mitochondrial ribosomal
           protein S27 protein.
          Length = 414

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 17/56 (30%), Positives = 34/56 (60%)
 Frame = +2

Query: 80  TSHATVRHSIKFDYVDELIQMLKDPLNYGLFLDDYSANILLNELLVKKNYTQAADI 247
           T H  +R  +K+D  D+ +  L + + YG+F D+++ N+L++  + K+NY  A  +
Sbjct: 108 TIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSV 163


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,914,203
Number of Sequences: 237096
Number of extensions: 1331909
Number of successful extensions: 5431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5431
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)