Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0846
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-12|CAB07392.5|  424|Caenorhabditis elegans Hypothetical p...    44   7e-05
Z81569-2|CAB04602.4|  424|Caenorhabditis elegans Hypothetical pr...    44   7e-05
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    32   0.42 
AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine r...    30   1.7  
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp...    28   5.1  

>Z92834-12|CAB07392.5|  424|Caenorhabditis elegans Hypothetical
           protein K11B4.1 protein.
          Length = 424

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 23/66 (34%), Positives = 38/66 (57%)
 Frame = +2

Query: 50  SAETGSMLESTSHATVRHSIKFDYVDELIQMLKDPLNYGLFLDDYSANILLNELLVKKNY 229
           S +    LES+ +A VR  +K+   + +I +  DP+NYG+FL+ + A I+++  L   N 
Sbjct: 98  SVKAAEKLESSEYAIVRLLLKYQ-PETIITLANDPINYGVFLNQHLACIVIDHFLKTSNI 156

Query: 230 TQAADI 247
             AA I
Sbjct: 157 QAAARI 162



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 406 FLRNPYFDDHFDIKDRLKLAGKTLAWISEKT 498
           +L+N  FD+HFD+ +   L GK+L W+S  T
Sbjct: 222 YLKNDSFDEHFDLSNPHHLIGKSLQWLSRDT 252


>Z81569-2|CAB04602.4|  424|Caenorhabditis elegans Hypothetical
           protein K11B4.1 protein.
          Length = 424

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 23/66 (34%), Positives = 38/66 (57%)
 Frame = +2

Query: 50  SAETGSMLESTSHATVRHSIKFDYVDELIQMLKDPLNYGLFLDDYSANILLNELLVKKNY 229
           S +    LES+ +A VR  +K+   + +I +  DP+NYG+FL+ + A I+++  L   N 
Sbjct: 98  SVKAAEKLESSEYAIVRLLLKYQ-PETIITLANDPINYGVFLNQHLACIVIDHFLKTSNI 156

Query: 230 TQAADI 247
             AA I
Sbjct: 157 QAAARI 162



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 406 FLRNPYFDDHFDIKDRLKLAGKTLAWISEKT 498
           +L+N  FD+HFD+ +   L GK+L W+S  T
Sbjct: 222 YLKNDSFDEHFDLSNPHHLIGKSLQWLSRDT 252


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 53  AETGSMLESTSHATVRHSIKFDYVDELIQMLKDPLNYGLFLDDYSANILLNEL 211
           ++     ES S   V  S+  +YVDELIQ L   L Y  + DD   + + N++
Sbjct: 296 SDVNKYFESLSRKNV-DSVSREYVDELIQSLSIQLKYLTYHDDCKCDDIWNQM 347


>AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein23 protein.
          Length = 287

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 198 NMFAL*SSKNSP*FKGSFNICINSST*SNLILCL---TVACDVDSSMLPV 58
           N+F L +++N     GSF I   +    NL +CL    V C +  S +P+
Sbjct: 22  NLFVLAAARNMSSMNGSFGIITKNHAICNLTMCLLYVLVVCPMQLSNIPI 71


>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 128  ELIQMLKDPLNYGLFLDDYSANILLNELLVKKNYTQAADIAAR 256
            E I+   D +   L  DD+  +IL  ELL+KK  T   +IA R
Sbjct: 2843 EDIEKWLDKVEGELSSDDHGRDILSTELLIKKLDTLQTEIAGR 2885


>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 128  ELIQMLKDPLNYGLFLDDYSANILLNELLVKKNYTQAADIAAR 256
            E I+   D +   L  DD+  +IL  ELL+KK  T   +IA R
Sbjct: 2843 EDIEKWLDKVEGELSSDDHGRDILSTELLIKKLDTLQTEIAGR 2885


>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
            spectrin homolog Sma1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 128  ELIQMLKDPLNYGLFLDDYSANILLNELLVKKNYTQAADIAAR 256
            E I+   D +   L  DD+  +IL  ELL+KK  T   +IA R
Sbjct: 2843 EDIEKWLDKVEGELSSDDHGRDILSTELLIKKLDTLQTEIAGR 2885


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,479,939
Number of Sequences: 27780
Number of extensions: 230143
Number of successful extensions: 508
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)