Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0846
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.0  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 573 CCQ*LNHISYISTNQLIVSYCLSIRCFFRYPC 478
           C   L  +S+ +T+  IVS  ++ RC F+  C
Sbjct: 118 CAAFLFQLSFATTSTTIVSGAMAERCNFKAYC 149


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 345 RASCHGRKQQKSGRNQNKSKVFTES 419
           R SC   ++QKS +N+N  + + E+
Sbjct: 271 RYSCSREREQKSYKNENSYRKYRET 295


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 453 VKIGWENISMDI*KNIEYLNN-NLQLIGWLI 542
           VK  WE  ++ I + +EY+ N   +L G L+
Sbjct: 151 VKEFWERRALQISEGVEYVGNIRWELAGTLL 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,442
Number of Sequences: 438
Number of extensions: 3091
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)