Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0846
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31600.1 68417.m04489 UDP-glucuronic acid/UDP-N-acetylgalacto...    28   4.8  
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein...    28   6.4  

>At4g31600.1 68417.m04489 UDP-glucuronic
           acid/UDP-N-acetylgalactosamine transporter-related
           contains weak similarity to UDP-glucuronic
           acid/UDP-N-acetylgalactosamine transporter (UDP-
           GlcA/UDP-GalNAc transporter) (Swiss-Prot:Q9NTN3) [Homo
           sapiens]
          Length = 323

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 209 IHSVICLHYNHPRTVHNLKDLLTSVLIH 126
           I+  + + Y H  TV  L+ L TS+LIH
Sbjct: 31  INKAVIMQYPHSMTVLTLQQLATSLLIH 58


>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 604

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 209 IHSVICLHYNHPRTV-H-NLKDLLTSVLIH 126
           +  V C H N   T  H NLKDL+TS+ IH
Sbjct: 571 LFDVFCKHGNDEFTYPHGNLKDLITSIFIH 600


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,411,161
Number of Sequences: 28952
Number of extensions: 199164
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)