Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0845
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   6.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   6.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.3  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 423 LRPILDEVHSHMQN 464
           ++ + D VH+H+QN
Sbjct: 48  IKDLFDNVHNHIQN 61


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 423 LRPILDEVHSHMQN 464
           ++ + D VH+H+QN
Sbjct: 31  IKDLFDNVHNHIQN 44


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 299 KILGST*RNLVEFTRDAEIYPIMNSSRKY 385
           +ILG+   NL++ TR A+     N+  KY
Sbjct: 402 RILGANVNNLIKNTRCAKSNNQNNNQNKY 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,903
Number of Sequences: 438
Number of extensions: 3133
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)