Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0845
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59510.1 68416.m06641 leucine-rich repeat family protein cont...    29   3.8  
At1g13750.1 68414.m01614 calcineurin-like phosphoesterase family...    29   3.8  
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing...    27   8.9  

>At3g59510.1 68416.m06641 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 419

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -2

Query: 506 SIFLLMLTLICCVSVLHV*MNFI*YWSEPIELWLEDPTITGISGYYSLWDISQHP 342
           S+F L+L+LI   SVL   +       E I +   DP+    S Y S WD S+ P
Sbjct: 21  SLFFLLLSLIVPSSVLSATLRSDIQALESI-IRSVDPSSISPSSYLSTWDFSEDP 74


>At1g13750.1 68414.m01614 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 613

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 187 YSIPILLFKTGKKYSRQVLVMVTVCSTHSMSNFK 288
           Y + I ++     Y R   V  +VC++H  SN+K
Sbjct: 491 YKVDIAIYGHAHNYERTCPVYQSVCTSHEKSNYK 524


>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
           protein similar to GCN4-complementing protein (GCP1)
           GI:6465806 from [Arabidopsis thaliana]
          Length = 850

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 223 KYSRQVLVMVTVCSTHSMSNFKHN*ENIRINLKK 324
           KYS ++ V   + S H  + F+   EN+R N KK
Sbjct: 651 KYSERIFVRKAIDSQHFQAVFQEIWENVRANDKK 684


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,960,634
Number of Sequences: 28952
Number of extensions: 230463
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)