Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0844
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.36 
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    27   2.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.4  
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    26   4.5  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    25   7.9  

>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +1

Query: 157 PSSYIPIAMKV*KR*VKSSHR*YKQISKYVHYFLSRDNVGIHYNNILTQSKL 312
           P +Y+ I + V  R  + S R +K  S + H F  R  +GIHYN+  +QS L
Sbjct: 136 PEAYLRIKL-VYTRSKRKSARKHKVPSSF-HRFSGRRGLGIHYNHSGSQSSL 185


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 292 CYYNVYLHYLLKENNEHIYLFVYI 221
           C YNVY H+ LK  N    +  YI
Sbjct: 86  CLYNVYAHHALKNGNAKSLVANYI 109


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 289  YYNVYLHYLLKENNEHIYLFVYITYVNS*PI 197
            YYN YL    K + E IYL ++ T +N+ PI
Sbjct: 1347 YYNKYLFETGKSSQEEIYL-LFKTLLNNLPI 1376


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 554 FHQMQAEVHYE*IFVSICPTIE-FGW*TVWFHSNSFNGAHYLVLH 423
           +HQ Q + H   IF  + P+I+ +GW T+  +      A  L+L+
Sbjct: 30  YHQFQTKNHVLDIFEDVIPSIQVYGWLTMTLYELGVLIADQLLLN 74


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 557 GKDSLLSRKFEETTKNEMCR--IIIPLPSCSPGCPATWKI 670
           GK+ + +  +++ T N M +  +I  +    PGCP  W++
Sbjct: 88  GKERISTSAWDQPTVNIMHKRGVICKVQYNGPGCPFIWEV 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,738
Number of Sequences: 5004
Number of extensions: 56945
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)