Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0844
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   2.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.6  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.4  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   8.4  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 560  KDSLLSRKFEETTKNEMCRIIIPLPSCSPGCPA 658
            K   + R   + T +++C  + P+ SC+ GC A
Sbjct: 1685 KHCTIHRTQVKETDDKICFTMRPVVSCASGCTA 1717


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = +3

Query: 399 LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRNE 515
           ++ YM    Q   +     + M+P C+  ++ C   R E
Sbjct: 28  IDMYMRRKCQECRLKKCLTVGMRPECMVPEYQCAVKRKE 66


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = +3

Query: 399 LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRNE 515
           ++ YM    Q   +     + M+P C+  ++ C   R E
Sbjct: 231 IDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKE 269


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 186 LHSDRYIGGWKKCI 145
           LHSDR +  + KC+
Sbjct: 38  LHSDRLLNNYFKCL 51


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 186 LHSDRYIGGWKKCI 145
           LHSDR +  + KC+
Sbjct: 38  LHSDRLLNNYFKCL 51


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 186 LHSDRYIGGWKKCI 145
           LHSDR +  + KC+
Sbjct: 38  LHSDRLLNNYFKCL 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,280
Number of Sequences: 438
Number of extensions: 4376
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)