Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0844
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06000.1 68416.m00685 leucine-rich repeat family protein cont...    29   2.2  
At4g20960.1 68417.m03035 cytidine/deoxycytidylate deaminase fami...    29   3.9  
At2g42490.1 68415.m05256 copper amine oxidase, putative similar ...    27   8.9  

>At3g06000.1 68416.m00685 leucine-rich repeat family protein
           contains Pfam doamin PF00560: Leucine Rich Repeat;
           contains similarity to RAN GTPase activating protein 2
           [Arabidopsis thaliana] gi|6708468|gb|AAF25948
          Length = 211

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 343 LKCYFTNVRNIISTVSKCYYNVYLHYLLKENNEHIYLFVYITY 215
           +K  FTN   ++  + K  YNV     L+EN+E  ++ V+I Y
Sbjct: 169 IKVIFTNCPKLLGPLDKNVYNVDDDDDLRENDEDEFVSVFIFY 211


>At4g20960.1 68417.m03035 cytidine/deoxycytidylate deaminase family
           protein similar to SP|P25539 Riboflavin biosynthesis
           protein ribD [Includes:
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (EC 3.5.4.26) (Riboflavin-specific deaminase);
           5-amino-6-(5- phosphoribosylamino)uracil reductase (EC
           1.1.1.193) (HTP reductase)] {Escherichia coli}; contains
           Pfam profile PF00383: Cytidine and deoxycytidylate
           deaminase zinc-binding region
          Length = 426

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 368 EIVGKLFHVLAGKLHGELYAIQD 436
           +IVG+ FH  AG+ H E++A++D
Sbjct: 107 DIVGQGFHPKAGQPHAEVFALRD 129


>At2g42490.1 68415.m05256 copper amine oxidase, putative similar to
           copper methylamine oxidase precursor (MAOXII)
           [Arthrobacter sp.] SWISS-PROT:Q07123
          Length = 776

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 669 IFQVAGHPGLQDGKGIIIRHISFLVVSSNFLDNSESLPVSPN 544
           +F +   P L+D   + + HI F ++   F + S ++ V PN
Sbjct: 707 VFGITHVPRLEDWPVMPVEHIGFTLMPHGFFNCSPAVDVPPN 748


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,816
Number of Sequences: 28952
Number of extensions: 263757
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)