Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0843
         (348 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   3.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   6.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   6.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   8.3  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 311 KVISLRTAST*DPATGGTARQIQR 240
           K+  ++ +S   PA+GGT  ++ R
Sbjct: 896 KLFRMKKSSALRPASGGTTARVVR 919


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 130  KRKYSSKYICIKTKMCSFFLLLN 62
            K+K S++   ++ KM   FL+LN
Sbjct: 1211 KKKVSAELKDLRDKMVFTFLMLN 1233


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 130  KRKYSSKYICIKTKMCSFFLLLN 62
            K+K S++   ++ KM   FL+LN
Sbjct: 1211 KKKVSAELKDLRDKMVFTFLMLN 1233


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = -1

Query: 288  FNLRPGYRWD 259
            FN  PG  WD
Sbjct: 1305 FNCAPGLHWD 1314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,929
Number of Sequences: 336
Number of extensions: 1585
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)