Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0843
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    44   7e-06
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   1.9  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   3.4  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    24   5.9  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    24   5.9  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    24   5.9  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    24   5.9  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    24   5.9  

>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 44.0 bits (99), Expect = 7e-06
 Identities = 16/30 (53%), Positives = 25/30 (83%)
 Frame = -3

Query: 250 RSNGYEKKFFEQQSKRKAQEEEAYKWSTED 161
           R NG+E K+F++Q++RKAQE EA+ W+ E+
Sbjct: 276 RGNGFENKWFQRQNERKAQEHEAHMWAIEE 305



 Score = 43.6 bits (98), Expect = 9e-06
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -1

Query: 330 AERPKYKGNFPPNRFNLRPGYRWDG 256
           + +  Y+G  PPNRFN+RPG+RWDG
Sbjct: 249 SSKATYQGYAPPNRFNIRPGHRWDG 273


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 192 RRKLISGVPRTCNGEVVTS*LKENI 118
           R  ++   P TC+G ++ S L+EN+
Sbjct: 223 RVPILGTYPNTCSGNIIVSWLQENL 247


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 1   RHEIGYSNHLTPGGL*VRPPN 63
           R EI +SN  TP    +RPPN
Sbjct: 259 RKEIAFSNSSTPTDQTLRPPN 279


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 324 RPKYKGNFPPNRFNLRPG 271
           RPKY  N+PP   N   G
Sbjct: 582 RPKYNINYPPYALNTEQG 599


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 235 EKKFFEQQSKRKAQEEEAYKWSTED 161
           EK F E  SKRK  + +  KW+T+D
Sbjct: 167 EKTFQELSSKRKRTKLQP-KWATDD 190


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 259 RRDRSNGYEKKFFEQQSKRKAQEEEAYKWSTED 161
           +R+      K+  +   ++K +EEE YKW   D
Sbjct: 291 KREEKKSMPKEQKKAIKQKKDEEEEKYKWCILD 323


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 45  VSSSTQFSNKKKLHIFVLIQIYFELYFLL 131
           V  ++  SNKK L ++ L   YF L +++
Sbjct: 195 VLQNSNLSNKKLLAVYPLFLFYFSLAWII 223


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 266 GGTARQIQRLREEVLRTTEQE 204
           G  A  IQR +EE  R TEQE
Sbjct: 88  GDLANLIQRYKEEKKRFTEQE 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,014
Number of Sequences: 5004
Number of extensions: 24863
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)