Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0843
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 43 8e-05
09_01_0020 + 413723-413738,413867-413934,414849-415144,415275-41... 28 2.3
09_03_0165 + 12936028-12936398,12936807-12936810 27 3.1
06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094... 27 4.0
02_01_0483 - 3467813-3467873,3468072-3468154,3468505-3468579,346... 27 5.3
01_02_0043 + 10549914-10550240,10550417-10550587 26 7.1
06_03_1141 - 27950970-27951155,27951212-27951308,27953108-27953229 26 9.3
03_05_0858 + 28309266-28311143 26 9.3
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 42.7 bits (96), Expect = 8e-05
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = -3
Query: 253 DRSNGYEKKFFEQQSKRKAQEEEAYKWSTEDL 158
DRSNG+EK F+ +++++A E+EAY WS D+
Sbjct: 521 DRSNGFEKDMFKLKNEKQATEQEAYLWSVADM 552
Score = 30.7 bits (66), Expect = 0.33
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 300 PPNRFNLRPGYRWDG 256
PPNR+ ++PG WDG
Sbjct: 505 PPNRYGIKPGRHWDG 519
>09_01_0020 +
413723-413738,413867-413934,414849-415144,415275-415400,
415484-415566,416514-416628,416755-416847,416963-417021,
417609-417684,417812-417901,418050-418202,418294-418480,
418752-418839,419077-419125,419233-419329
Length = 531
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -3
Query: 304 FPSEPLQPETRLPVGRRDRSNGYEKKFFEQQSKRKAQEEEAYKWSTE 164
+PS + E P G +D Y F + KRKA E + TE
Sbjct: 188 YPSSRNKMEVDEPTGSKDNDYDYWLPFLDASVKRKASETDGENVYTE 234
>09_03_0165 + 12936028-12936398,12936807-12936810
Length = 124
Score = 27.5 bits (58), Expect = 3.1
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Frame = -2
Query: 329 QNAQNIKVISLRTAST*DPATGGTARQIQRL---------REEVLRTTEQEESSRGGS 183
+N IK+ S+R P+ G QRL R R QEE SRGGS
Sbjct: 33 KNCGRIKIKSVREGDVQSPSPGSQGAPAQRLDQGQVGEGGRHAQCRLHRQEEESRGGS 90
>06_02_0068 +
11107493-11107653,11109116-11109218,11109311-11109423,
11109502-11109624,11110165-11110266,11110367-11110532,
11111215-11111331,11111438-11111478,11111735-11111836,
11111924-11112140,11112271-11112498,11112580-11112707,
11112804-11112921,11113020-11113235,11113314-11113463,
11113553-11113629,11113973-11114190,11114443-11114656,
11114744-11114823,11114898-11115015,11115092-11115262,
11116124-11116292,11116404-11116447,11116620-11116662,
11116743-11116888,11118337-11118431,11118579-11119477,
11120540-11120638,11120907-11121002,11123447-11123568,
11123675-11123767,11123922-11124114
Length = 1653
Score = 27.1 bits (57), Expect = 4.0
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +3
Query: 24 PLNTRWAVSSSTQFSNKK------KLHIFVLIQIYFELY 122
P NTR+ SS T+ +K K HIFVL I F Y
Sbjct: 273 PRNTRFLFSSKTRTPSKAIAKSICKTHIFVLKNIKFRFY 311
>02_01_0483 -
3467813-3467873,3468072-3468154,3468505-3468579,
3468728-3468782,3470595-3470950
Length = 209
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 253 DRSNGYEKKFFEQQSKRKAQEEEAYKWS 170
D GYE+ + EQQSK + +E + + S
Sbjct: 9 DEPPGYERSYDEQQSKEEEEEADTKEGS 36
>01_02_0043 + 10549914-10550240,10550417-10550587
Length = 165
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 283 PETRLPVGRRDRSNGYEKKFFEQQSKRKAQEEE 185
PE P R R G +++ E+ + R+ +EEE
Sbjct: 70 PEVTEPAAARSRLEGRKREMREEINMRRGEEEE 102
>06_03_1141 - 27950970-27951155,27951212-27951308,27953108-27953229
Length = 134
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 333 FAERPKYKGNFPPNRFNLRPGYRWDG 256
F R KG PP R +L PG W G
Sbjct: 19 FFWRSTAKGTAPPARASLSPGAAWFG 44
>03_05_0858 + 28309266-28311143
Length = 625
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 332 SQNAQNIKVISLRTAST*DPATGGTARQIQRLREEVLRTTEQEESS 195
S + ++ ISL +T DP+ +AR +R+R T+ SS
Sbjct: 151 SSSTYALRPISLPVVATADPSAADSARDTKRMRTGGGSTSSSSSSS 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,140,810
Number of Sequences: 37544
Number of extensions: 160473
Number of successful extensions: 388
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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