Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0843
(348 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36234| Best HMM Match : E-MAP-115 (HMM E-Value=0.25) 39 0.001
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 36 0.009
SB_19752| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.34
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 30 0.59
SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23) 29 1.0
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84) 27 3.2
SB_25674| Best HMM Match : PyrI_C (HMM E-Value=8.4) 27 3.2
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31) 27 3.2
SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94) 26 9.7
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1) 26 9.7
SB_16695| Best HMM Match : MTHFR (HMM E-Value=2.10195e-44) 26 9.7
>SB_36234| Best HMM Match : E-MAP-115 (HMM E-Value=0.25)
Length = 257
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = -3
Query: 304 FPSEPLQPET-RLPVGRR----DRSNGYEKKFFEQQSKRKAQEEEAYKWSTEDL 158
+ P QP +P G R DRSNG+E++ F + ++A + A+KWS ED+
Sbjct: 204 YKGPPPQPNRFGIPPGYRWDGVDRSNGFERRRFAMIANKQATDSVAHKWSVEDM 257
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 35.9 bits (79), Expect = 0.009
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -3
Query: 286 QPETRLPVGRRDRSNGYEKKFFEQQSKRKAQEEEAYKWSTEDL*RR 149
+ E L R R EKK E++ KR+ +EE A KW E+L R+
Sbjct: 246 EEEANLMEEERKRKEEAEKKREEEERKRREEEEAAQKWKKEELLRQ 291
>SB_19752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 30.7 bits (66), Expect = 0.34
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 304 FPSEPLQPETRLPVGRRDRSNGY-EKKFFEQQSKRKAQEEEAYKW 173
FPSE E+ P G R G EK+F E+ +R AQE Y W
Sbjct: 44 FPSEANGAES--PSGGSPRRQGLSEKEFMERIQERMAQEVSGYVW 86
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 29.9 bits (64), Expect = 0.59
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 259 RRDRSNGYEKKFFEQQSKRKAQEEEAYKWSTE 164
R +R EK+ E+Q++RKA+EE A K E
Sbjct: 309 REERRKQEEKRRAEEQARRKAEEERAAKAKAE 340
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 259 RRDRSNGYEKKFFEQQSKRKAQEEEAYKWSTE 164
+ +R EK+ E+++KRKA+EE+A + E
Sbjct: 244 QEERRRQEEKRRAEEEAKRKAEEEKAAREKAE 275
>SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)
Length = 486
Score = 29.1 bits (62), Expect = 1.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 333 FAERPKYKGNFPPNRFNLRPGYRWD 259
F+ +Y GN+PP+R L Y W+
Sbjct: 356 FSATSQYNGNYPPSRGRLHSIYSWE 380
>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
Length = 650
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = -2
Query: 278 DPATGGTARQIQRLREEV----LRTTEQEESSRGGSL*VEYRGLVTAR 147
D + G T+ +++RL+ EV LRT + ++ GG YR L T+R
Sbjct: 99 DESDGDTS-EVERLQHEVELSVLRTRRRHITTHGGQTVSSYRDLATSR 145
>SB_25674| Best HMM Match : PyrI_C (HMM E-Value=8.4)
Length = 104
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 272 PGL-RLKRFGGKLPLYFGRSAKKKKK 346
PG+ +LKRFG +PL + A+KK+K
Sbjct: 69 PGVSQLKRFGAVIPLPYVAHAQKKRK 94
>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
Length = 1273
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = -2
Query: 278 DPATGGTARQIQRLREEV----LRTTEQEESSRGGSL*VEYRGLVTAR 147
D + G T+ +++RL+ EV LRT + ++ GG YR L T+R
Sbjct: 867 DESDGDTS-EVERLQHEVELSVLRTRRRHITTHGGQTVSSYRDLATSR 913
>SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)
Length = 969
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -3
Query: 301 PSEPLQPETRLPVGRRDRSNGYEKKFFEQQSKRKAQEEEA 182
P + +L R R G + Q+ RKAQEEEA
Sbjct: 839 PGRAVAMHQKLSSPSRKRGGGRLRMIMLQEKVRKAQEEEA 878
>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
Length = 630
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 298 SEPLQPETRLPVGRRDRSNGYEKKFFEQQSKR 203
+EP+ P T P RR NG +++ ++ KR
Sbjct: 42 TEPVLPVTEAPTKRRKGKNGSKRRKRRKKKKR 73
>SB_16695| Best HMM Match : MTHFR (HMM E-Value=2.10195e-44)
Length = 543
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 30 NTRWAVSSSTQFSNKKKLHIFV 95
N RW SSS F + K H+F+
Sbjct: 341 NGRWGNSSSASFGDLKDYHLFL 362
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,313,820
Number of Sequences: 59808
Number of extensions: 184140
Number of successful extensions: 480
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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