Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0843
         (348 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC006350-1|AAH06350.1|  619|Homo sapiens BUD13 homolog (S. cerev...    46   4e-05
AK057832-1|BAB71593.1|  485|Homo sapiens protein ( Homo sapiens ...    46   4e-05

>BC006350-1|AAH06350.1|  619|Homo sapiens BUD13 homolog (S.
           cerevisiae) protein.
          Length = 619

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = -3

Query: 253 DRSNGYEKKFFEQQSKRKAQEEEAYKWSTEDL 158
           DRSNG+E+K F + + +KA EE AYKWS ED+
Sbjct: 588 DRSNGFEQKRFARLASKKAVEELAYKWSVEDM 619



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = -1

Query: 324 RPKYKGNFPP-NRFNLRPGYRWDG 256
           RP+Y G  PP NRFN+ PGYRWDG
Sbjct: 563 RPRYSGPAPPPNRFNIWPGYRWDG 586


>AK057832-1|BAB71593.1|  485|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25103 fis, clone CBR01405. ).
          Length = 485

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = -3

Query: 253 DRSNGYEKKFFEQQSKRKAQEEEAYKWSTEDL 158
           DRSNG+E+K F + + +KA EE AYKWS ED+
Sbjct: 454 DRSNGFEQKRFARLASKKAVEELAYKWSVEDM 485



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = -1

Query: 324 RPKYKGNFPP-NRFNLRPGYRWDG 256
           RP+Y G  PP NRFN+ PGYRWDG
Sbjct: 429 RPRYSGPAPPPNRFNIWPGYRWDG 452


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,194,807
Number of Sequences: 237096
Number of extensions: 926997
Number of successful extensions: 2441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2435
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)