Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0843
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical pr...    43   5e-05
U32305-11|AAL50323.1|  663|Caenorhabditis elegans Splicing facto...    31   0.30 
U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing facto...    31   0.30 
U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor...    31   0.30 
U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.       31   0.30 
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    27   4.9  
U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    26   6.4  
Z83122-1|CAB05597.1|  293|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z50859-6|CAE17972.1|  106|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical
           protein R08D7.1 protein.
          Length = 458

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = -1

Query: 321 PKYKGNFPPNRFNLRPGYRWDG 256
           P Y G+F PNRF + PGYRWDG
Sbjct: 404 PSYHGHFVPNRFGIAPGYRWDG 425



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 253 DRSNGYEKKFFEQQSKRKAQEEEAYK 176
           DRSNG+E K  + ++ + A + E YK
Sbjct: 427 DRSNGFEGKLAKTENTKTANQSEYYK 452


>U32305-11|AAL50323.1|  663|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           b protein.
          Length = 663

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -3

Query: 301 PSEP-LQPETRLPVGRRDRSNGYEKKFFEQQSKRKAQEEE 185
           P+ P + P T++ V R++++  + +K  +++  +K QEEE
Sbjct: 491 PTPPVIPPSTQMQVDRKEKARIFMEKLLQEKKAKKLQEEE 530


>U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           a protein.
          Length = 749

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -3

Query: 301 PSEP-LQPETRLPVGRRDRSNGYEKKFFEQQSKRKAQEEE 185
           P+ P + P T++ V R++++  + +K  +++  +K QEEE
Sbjct: 577 PTPPVIPPSTQMQVDRKEKARIFMEKLLQEKKAKKLQEEE 616


>U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           d protein.
          Length = 751

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -3

Query: 301 PSEP-LQPETRLPVGRRDRSNGYEKKFFEQQSKRKAQEEE 185
           P+ P + P T++ V R++++  + +K  +++  +K QEEE
Sbjct: 579 PTPPVIPPSTQMQVDRKEKARIFMEKLLQEKKAKKLQEEE 618


>U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.
          Length = 749

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -3

Query: 301 PSEP-LQPETRLPVGRRDRSNGYEKKFFEQQSKRKAQEEE 185
           P+ P + P T++ V R++++  + +K  +++  +K QEEE
Sbjct: 577 PTPPVIPPSTQMQVDRKEKARIFMEKLLQEKKAKKLQEEE 616


>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical protein
            K03H1.2 protein.
          Length = 1131

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -2

Query: 329  QNAQNIKVISLRTAST*DPATGGTARQIQRLREEVLRTTEQEESSR 192
            Q+ + +K+ S+RT  T +       ++++R +EE  +  ++ ESSR
Sbjct: 1066 QSRKELKMESVRTVETMEAEMREAQKEMERRKEESDKAFKRPESSR 1111


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determination
            protein MOG-1 protein.
          Length = 1131

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -2

Query: 329  QNAQNIKVISLRTAST*DPATGGTARQIQRLREEVLRTTEQEESSR 192
            Q+ + +K+ S+RT  T +       ++++R +EE  +  ++ ESSR
Sbjct: 1066 QSRKELKMESVRTVETMEAEMREAQKEMERRKEESDKAFKRPESSR 1111


>U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical protein
            F20D12.2 protein.
          Length = 1116

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 286  QPETRLPVGRRDRSNGYEKKF---FEQQSKRKAQEEE 185
            +PE  LP   +++     + F   FE+ SK+K Q+EE
Sbjct: 1031 EPEAVLPTELKEKIKRKRESFEKVFEEHSKKKKQDEE 1067


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
            protein W03F11.4 protein.
          Length = 1406

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 253  DRSNGYEKKFFEQQSKRKAQEEEAYKWSTEDL*RRG 146
            D +  YE++   Q+  +K Q+E A K  +ED  RRG
Sbjct: 1348 DVNKEYEERQKFQEQLKKIQKENAKKPKSEDRPRRG 1383


>Z83122-1|CAB05597.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A5.2 protein.
          Length = 293

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 257 ARQIQRLREEVLRTTEQ 207
           A ++ RLREE LRTTE+
Sbjct: 154 AEEMHRLREEQLRTTER 170


>Z50859-6|CAE17972.1|  106|Caenorhabditis elegans Hypothetical
           protein T26C5.5 protein.
          Length = 106

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 298 SEPLQPETRLPVGRRDRSNGYEKKFFEQQSKRKAQEEEAYKWSTEDL*RRGGY 140
           SE L+      VG       Y+ K+ +QQ    A+E   + WS   +  RGGY
Sbjct: 29  SEKLRELVLETVGIYPHQYSYQAKYLKQQ----AEERFGFWWSAVIVSERGGY 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,965,150
Number of Sequences: 27780
Number of extensions: 140801
Number of successful extensions: 344
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)