Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0843
         (348 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31870.1 68414.m03917 expressed protein                             40   6e-04
At1g78610.1 68414.m09161 mechanosensitive ion channel domain-con...    29   0.85 
At4g24175.1 68417.m03469 expressed protein                             29   1.1  
At5g06360.1 68418.m00712 ribosomal protein S8e family protein co...    27   2.6  
At4g24000.1 68417.m03449 cellulose synthase family protein simil...    27   4.5  
At4g37120.1 68417.m05257 expressed protein                             26   6.0  
At2g35620.1 68415.m04368 leucine-rich repeat transmembrane prote...    26   6.0  
At4g30690.1 68417.m04350 translation initiation factor 3 (IF-3) ...    26   7.9  

>At1g31870.1 68414.m03917 expressed protein
          Length = 561

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = -3

Query: 253 DRSNGYEKKFFEQQSKRKAQEEEAYKWSTEDL 158
           DRSNG EK   ++ ++RKA E EAY WS  D+
Sbjct: 530 DRSNGTEKDLIKKTNERKATEIEAYLWSVADM 561


>At1g78610.1 68414.m09161 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 856

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 301 PSEPLQPETR-LPVGRRDRSNGYEKKFFEQQSKRKAQEEEAYKWSTEDL 158
           P+  L P+T  +  GR  +S   +  FF +  K + +EEE   ++ EDL
Sbjct: 181 PTPQLPPQTADMKSGRIPKSGQMKSGFFGKSPKTQGEEEEDDPFAAEDL 229


>At4g24175.1 68417.m03469 expressed protein
          Length = 306

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -3

Query: 340 FFFRRTPKI*R*FPSEPLQPETRLPVGRRDRSN-GYEKKFFEQQSKRKAQEEEAYKWSTE 164
           F   R+P   R  P+ P   +  + V   D  N GYE      +++RK     A KW  E
Sbjct: 46  FSTERSPPRRRIRPAPPEALKPTVIVAEEDGDNDGYESDSLRSRNQRKRDARRAVKWGME 105


>At5g06360.1 68418.m00712 ribosomal protein S8e family protein
           contains Pfam profile PF01201: Ribosomal protein S8e
          Length = 260

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 250 RSNGYEKKFFEQQSKRKAQEEEAYKWSTEDL*RRGGY*LVKRKYSSKYICIKT 92
           + NGY    FE++ K++A+E   +    +      G  + K+ Y+ K +  KT
Sbjct: 12  KRNGYRLDHFERKRKKEAREVHKHSTMAQKSLGIKGKMIAKKNYAEKALMKKT 64


>At4g24000.1 68417.m03449 cellulose synthase family protein similar
           to cellulose synthase from Gossypium hirsutum
           [gi:1706956], cellulose synthase-5 from Zea mays
           [gi:9622882]
          Length = 722

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = -3

Query: 226 FFEQQSKRKAQEEEAYKWSTEDL*RRGGY*LVKRKYSSKYICIKTKMCSFFLLLNWVDEL 47
           +F  +S   + E E  K   ED+  R  + +   K  + +I      C F L   W D+ 
Sbjct: 176 YFSSKSHSSSDEAENLKMMYEDMKSRVEHVVESGKVETAFIACDQFSCVFDL---WTDKF 232

Query: 46  TAH 38
           T H
Sbjct: 233 TRH 235


>At4g37120.1 68417.m05257 expressed protein
          Length = 536

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 262 GRRDRSNGYEKKFFEQQSKRKAQEEEAYK 176
           G+RDR NGY+   +     R   +EEA K
Sbjct: 140 GKRDRWNGYDTSTYRHVVDRYDAKEEARK 168


>At2g35620.1 68415.m04368 leucine-rich repeat transmembrane protein
           kinase, putative similar to somatic embryogenesis
           receptor-like kinase 1 (SERK1) [Zea mays]
           gi|13897318|emb|CAC37640; contains leucine rich repeat
           (LRR) domains, Pfam:PF00560; contains protein kinase
           domain, Pfam:PF00069
          Length = 589

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 106 ICIKTKMCSFFLLLNWVDELT 44
           IC+  + CS+FLL++++  LT
Sbjct: 3   ICLMKRCCSWFLLISFLSALT 23


>At4g30690.1 68417.m04350 translation initiation factor 3 (IF-3)
           family protein similar to SP|P33319 Translation
           initiation factor IF-3 {Proteus vulgaris}; contains Pfam
           profiles PF00707: Translation initiation factor IF-3,
           C-terminal domain, PF05198: Translation initiation
           factor IF-3, N-terminal domain
          Length = 281

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -3

Query: 289 LQPETRLPVGRRDRSNGYEKKFFEQQSKRKAQEEEAYKWSTEDL*RRGGY*LVKRKYS 116
           L P+   PV R      Y K  +EQQ ++K Q+++  +   ++L  + GY + +  YS
Sbjct: 128 LSPDADPPVVRM---MDYSKYRYEQQKRKKEQQKKTTRMDLKEL--KMGYNIDQHDYS 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,436,685
Number of Sequences: 28952
Number of extensions: 135377
Number of successful extensions: 342
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)