Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0842
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    28   1.1  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    27   1.9  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    26   5.9  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.8  
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    25   7.8  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -1

Query: 473 KNTSPFYTALNAEQLRLGNQIDNDIFLLNSIIDSQLCCDVPSISPI 336
           ++TSPF + L+++ LRL  +      L+N  + S L    P +SPI
Sbjct: 106 RSTSPF-SQLSSQSLRLNAEEIAPSSLINKAVQSTLRLSEPLVSPI 150


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
          Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 94 QNYCDNVFNVVALCER*LSPRA 29
          QN+C N +NV  LC R   P A
Sbjct: 25 QNFCRNEYNVTGLCNRQSCPLA 46


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 232 VLQARMSGYDICIL*FGDQVGKG 164
           ++Q+ M GY++CI  +G Q G G
Sbjct: 547 LIQSAMDGYNVCIFAYG-QTGSG 568


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 615 CSRCHDDCKGTRSPVRTESTAGFEK 689
           C + H DC  TR+P++     GF +
Sbjct: 101 CRKHHLDCNFTRTPLKRGPAKGFNR 125


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +1

Query: 31  PEAKAIAHIEPRH*RHCHNSFE*SD 105
           PE K  A     H R CHNSF  SD
Sbjct: 117 PELKGEALGNSEHIRCCHNSFARSD 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,926
Number of Sequences: 5004
Number of extensions: 60176
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)