Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0842
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0570 - 4195409-4195443,4196245-4196333,4196539-4196630,419...    30   2.0  
05_07_0290 + 29016410-29018920                                         28   8.1  
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042     28   8.1  

>02_01_0570 -
           4195409-4195443,4196245-4196333,4196539-4196630,
           4196726-4196833,4196984-4197118,4197211-4197256,
           4197358-4197458,4198285-4198422,4198503-4198601,
           4198740-4198856,4199195-4199356,4199734-4199793,
           4200371-4200538,4200608-4200718,4201401-4201499,
           4201579-4201644,4202407-4202490,4202563-4202605,
           4202684-4202739,4202817-4202925,4203442-4203524,
           4203842-4203925,4204311-4204382,4204462-4204539,
           4204633-4204716,4204806-4204876,4205943-4206012,
           4206495-4206626,4207168-4207284,4208185-4208367
          Length = 963

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 424 LEIRSTMTFSYLIPLSILNYVVMSQVFRRFSGHRTAKD*LIQFPYYFLTQNRTIF 260
           + +    TF  ++ LS+   V++  V R F+GH T  D  IQF     +   TIF
Sbjct: 298 VRLNGVATFIGIVGLSVAAMVLIVLVARYFTGHTTNPDGSIQFVKGQTSVKSTIF 352


>05_07_0290 + 29016410-29018920
          Length = 836

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 512 KTMLTWSK*SLEYKNTSPFYTALNAEQLRLGNQIDNDIFLLNSII 378
           + + TW+     Y N   F  AL   +L   N++D DI   N +I
Sbjct: 356 RNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLI 400


>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
          Length = 1211

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 608 KKLLEFYNKRYNKFRFPVSTTRTRLLYYVN*KKTMLT 498
           KKL   Y   YN  + P S  + + L Y+N KKT+++
Sbjct: 596 KKLQVLYLSFYNTRKLPESIGQLKHLRYLNIKKTLIS 632


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,458,750
Number of Sequences: 37544
Number of extensions: 352807
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)