Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0842
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensor...    30   1.8  
Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensory
           abnormality protein17 protein.
          Length = 262

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 458 FYTALNAEQLRLGNQIDNDIFLLNSIIDSQLCCDVPSISPI*WTSYRKGLINPI 297
           FY   + ++  +G QI + +F        QL  D PS++ + + S + GLI P+
Sbjct: 111 FYVHFSCQRQGVGQQILDYMFSQEHTEPYQLALDNPSVTLLGFMSQKYGLIKPV 164


>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 472 KTHRHFTQPLMQNN*DL-EIRSTMTFSYLIPLSILNYVVMSQVFRRFS 332
           +T  HF   L  NN  + E      F YL  +S+LN+VV  ++F+R S
Sbjct: 476 ETSEHFD--LESNNLSIIEHNHLDLFFYLCIISLLNFVVYRKIFKRKS 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,404,634
Number of Sequences: 27780
Number of extensions: 339574
Number of successful extensions: 645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)