Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0842
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    29   3.9  
At3g15130.1 68416.m01914 pentatricopeptide (PPR) repeat-containi...    27   9.0  
At2g16230.1 68415.m01860 glycosyl hydrolase family 17 protein si...    27   9.0  

>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -1

Query: 467 TSP-FYTALNAEQLRLGNQIDNDI--FLLNSIIDSQL 366
           T+P FYTA N  +L   +++D D    L+NSIID +L
Sbjct: 52  TNPEFYTAWNYPKLAFESRLDEDSDPSLVNSIIDEEL 88


>At3g15130.1 68416.m01914 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 689

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = -1

Query: 515 KKTMLTWSK*SLEYKNTSPFYTALNA-EQLR-LGNQIDNDIFLLNSII 378
           +KTM++WS   L Y     F  A+   ++L+ L +QID+  F L+SII
Sbjct: 275 EKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDS--FALSSII 320


>At2g16230.1 68415.m01860 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 456

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 470 NTSPFYTALNAEQLRLGNQI--DNDIFLLNSII 378
           N  PFY A N   + +GN++   ND+ L+N ++
Sbjct: 100 NVLPFYPASNIILINVGNEVLLSNDLNLVNQLL 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,281
Number of Sequences: 28952
Number of extensions: 302939
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)