Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0841
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 149 3e-37
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 149 4e-37
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 41 1e-04
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.61
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 28 1.4
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 3.3
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 26 5.7
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 25 7.5
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 25 9.9
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.9
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 149 bits (362), Expect = 3e-37
Identities = 68/86 (79%), Positives = 80/86 (93%)
Frame = +3
Query: 246 PQELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 425
P+ LFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 67 PKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHAR 126
Query: 426 ILIRQRHIRVRKQVVNIPSFIVRLDS 503
+LI QRHIRV KQ+VN+PSF+VRLD+
Sbjct: 127 VLIFQRHIRVGKQIVNVPSFVVRLDA 152
Score = 103 bits (246), Expect = 3e-23
Identities = 47/64 (73%), Positives = 53/64 (82%)
Frame = +1
Query: 61 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 240
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 241 KDPK 252
KDPK
Sbjct: 65 KDPK 68
Score = 52.8 bits (121), Expect = 4e-08
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +2
Query: 506 QHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 598
+HIDF+L SP+GGGRPGR KRK LR Q GG
Sbjct: 154 KHIDFALSSPYGGGRPGRCKRKRLRSQQEGG 184
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 149 bits (361), Expect = 4e-37
Identities = 68/86 (79%), Positives = 80/86 (93%)
Frame = +3
Query: 246 PQELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 425
P+ LFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 67 PKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHAR 126
Query: 426 ILIRQRHIRVRKQVVNIPSFIVRLDS 503
+LI QRHIRV KQ+VN+PSF+VRLD+
Sbjct: 127 VLIFQRHIRVGKQIVNVPSFVVRLDT 152
Score = 103 bits (246), Expect = 3e-23
Identities = 47/64 (73%), Positives = 53/64 (82%)
Frame = +1
Query: 61 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 240
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 241 KDPK 252
KDPK
Sbjct: 65 KDPK 68
Score = 52.4 bits (120), Expect = 6e-08
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +2
Query: 506 QHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 595
+HIDF+L SP+GGGRPGR KRK LR +GG
Sbjct: 154 KHIDFALSSPYGGGRPGRCKRKRLRSQEGG 183
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +3
Query: 246 PQELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 425
P L N LL +L +G+L K D + RRL + K +++ + A
Sbjct: 69 PFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEAT 128
Query: 426 ILIRQRHIRVRKQVVNIPSFIV 491
LI Q H+RV V+ P+++V
Sbjct: 129 RLIEQGHVRVGPHVITDPAYLV 150
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.1 bits (62), Expect = 0.61
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 347 D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 478
D GLLGA+S GVQS PG P P + P S P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +3
Query: 366 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGNTLTSL*NLHSVE 545
R L G+ ++I+ +++L + +RK N+P ++ LD+ +T L L E
Sbjct: 110 RGLDCWYLVVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQE 169
Query: 546 VVLDVSRGRTSAR 584
+L G S R
Sbjct: 170 DLLSSRDGEASLR 182
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 318 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 449
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 405 KSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGNTLTSL*NLHSVEV 548
+S+ H R L +H+R+ N P+ I +L + SL L+ V +
Sbjct: 306 RSLDHLRTLENLKHLRITLSYFNKPTDIAKLLVIARIPSLVKLNDVNI 353
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 457 ASKL*TSHHLLCAWTLATH*LLSEISIRWRSSWTCQEEE 573
A K+ SH+LL A +T + + I W ++C++EE
Sbjct: 119 AYKITDSHYLLVAIIQSTTAIQAGILTAWYQLYSCKKEE 157
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 9.9
Identities = 7/27 (25%), Positives = 15/27 (55%)
Frame = +1
Query: 517 LLSEISIRWRSSWTCQEEEPPQGTGWR 597
+L ++S W+ +W +E++ WR
Sbjct: 390 ILGDLSEEWKDAWRWREDDKASELKWR 416
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 34 LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 192
++K VN FS + +R + A +D + + E RN++ +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,813
Number of Sequences: 5004
Number of extensions: 52373
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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