Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0841
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 128 3e-30
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 128 3e-30
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 128 3e-30
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 88 5e-18
07_03_1358 - 25984897-25984997,25985623-25985650 47 2e-05
07_03_1357 - 25982861-25983068,25983354-25983361 39 0.004
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 33 0.27
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 1.5
07_03_0366 + 17321948-17322331 29 3.4
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 29 3.4
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 4.5
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 29 4.5
03_06_0069 - 31449319-31450368 28 5.9
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 28 7.8
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 128 bits (310), Expect = 3e-30
Identities = 60/88 (68%), Positives = 75/88 (85%)
Frame = +3
Query: 240 EGPQELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 419
+ P+ +FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHH
Sbjct: 67 KNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHH 126
Query: 420 ARILIRQRHIRVRKQVVNIPSFIVRLDS 503
AR+LIRQRHIRV +Q+VNIPSF+VR++S
Sbjct: 127 ARVLIRQRHIRVGRQIVNIPSFMVRVES 154
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/61 (65%), Positives = 51/61 (83%)
Frame = +1
Query: 70 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 249
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 250 K 252
+
Sbjct: 70 R 70
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +2
Query: 506 QHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 598
+HIDFSL SPFGGG PGRVKRKN +K GGG
Sbjct: 156 KHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 186
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 128 bits (310), Expect = 3e-30
Identities = 60/88 (68%), Positives = 75/88 (85%)
Frame = +3
Query: 240 EGPQELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 419
+ P+ +FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHH
Sbjct: 90 KNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHH 149
Query: 420 ARILIRQRHIRVRKQVVNIPSFIVRLDS 503
AR+LIRQRHIRV +Q+VNIPSF+VR++S
Sbjct: 150 ARVLIRQRHIRVGRQIVNIPSFMVRVES 177
Score = 91.9 bits (218), Expect = 4e-19
Identities = 40/59 (67%), Positives = 50/59 (84%)
Frame = +1
Query: 76 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 252
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPR 93
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +2
Query: 506 QHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 598
+HIDFSL SPFGGG PGRVKRKN +K GGG
Sbjct: 179 KHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 209
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 128 bits (310), Expect = 3e-30
Identities = 60/88 (68%), Positives = 75/88 (85%)
Frame = +3
Query: 240 EGPQELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 419
+ P+ +FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHH
Sbjct: 283 KNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHH 342
Query: 420 ARILIRQRHIRVRKQVVNIPSFIVRLDS 503
AR+LIRQRHIRV +Q+VNIPSF+VR++S
Sbjct: 343 ARVLIRQRHIRVGRQIVNIPSFMVRVES 370
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/61 (65%), Positives = 51/61 (83%)
Frame = +1
Query: 70 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 249
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 250 K 252
+
Sbjct: 286 R 286
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +2
Query: 506 QHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 598
+HIDFSL SPFGGG PGRVKRKN +K GGG
Sbjct: 372 KHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 402
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 88.2 bits (209), Expect = 5e-18
Identities = 42/70 (60%), Positives = 51/70 (72%)
Frame = +3
Query: 240 EGPQELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 419
+ P+ +FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH
Sbjct: 56 KNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHH 115
Query: 420 ARILIRQRHI 449
+LIRQ HI
Sbjct: 116 DHVLIRQHHI 125
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = +1
Query: 70 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 249
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 250 K 252
+
Sbjct: 59 R 59
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1
Query: 70 FSKTYVTPRRPFEKARLDQELKIIGEYG 153
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +2
Query: 506 QHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 598
+HI FSL SP GG RVKRKN + GGG
Sbjct: 22 KHIAFSLTSPLGGSPAVRVKRKNQKASGGGG 52
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +3
Query: 450 RVRKQVVNIPSFIVRLDS 503
RV +Q+VNIPSFIVRL+S
Sbjct: 3 RVGRQLVNIPSFIVRLES 20
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 366 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGNTLT 518
RRL T + K A+ + A I+Q H+RV + V P+F+V + + +T
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLVTRNMEDFIT 132
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 539 GGGRPGRVKRKNLRKGQGGG 598
G RPG RKN +GQGGG
Sbjct: 1369 GSSRPGEWNRKNNNRGQGGG 1388
>07_03_0366 + 17321948-17322331
Length = 127
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 497 GLWQHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGA 601
G+ ++ +S GGG R +R+ R+G GGGA
Sbjct: 30 GIGDTVEAERQSRHGGGGRRRRQRRGRRRGSGGGA 64
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 365 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPIIYCA 493
A+S G SW CQ++DPAK Y+ Q H I+ A
Sbjct: 394 AASLVKGNLSWRSREFLDCQSYDPAKVYNFIQTGV-HGRIFAA 435
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 348 IEDFLERRLQTQVFKAGLAKSIHHAR 425
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 124 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKS--CSK--VMPFYVVW 288
Q L+ I G+ + +E++ + +L RIR R LT+E D + C +MP + W
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLDALNTVCPTIGIMPSGIPW 270
>03_06_0069 - 31449319-31450368
Length = 349
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -3
Query: 420 HDGWTSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYE 289
HD +S G L P+SA +P + SDQ H VS+ P Y+
Sbjct: 237 HDVLSSLG-LKLPSSASSSPAASYYSDQLHAVVSNAGRPQAPYD 279
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +1
Query: 40 KMVNNRVPSVFS----KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR 207
K+ NN +P + K + ++ E LD L + G +R++RE RV YT
Sbjct: 343 KLKNNYLPEMEKIHKKKERLLKKQQREALLLDNRLTVNGFTSVRSRRERKRVTYTFDDYE 402
Query: 208 KAARELLTLEEKDPKS 255
++ E + +K S
Sbjct: 403 RSINEAIKPTKKSENS 418
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,809,445
Number of Sequences: 37544
Number of extensions: 394423
Number of successful extensions: 1191
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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