Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0841
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             159   2e-39
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.052
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               30   1.5  
SB_44630| Best HMM Match : HECT (HMM E-Value=0)                        28   6.0  
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       28   7.9  
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 28   7.9  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  159 bits (385), Expect = 2e-39
 Identities = 75/86 (87%), Positives = 82/86 (95%)
 Frame = +3

Query: 246 PQELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 425
           P+ LFEGNALLRRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 65  PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHAR 124

Query: 426 ILIRQRHIRVRKQVVNIPSFIVRLDS 503
           +LIRQRHIRVRKQ+VN+PSF+VRLDS
Sbjct: 125 VLIRQRHIRVRKQLVNVPSFVVRLDS 150



 Score =  116 bits (280), Expect = 1e-26
 Identities = 55/62 (88%), Positives = 58/62 (93%)
 Frame = +1

Query: 67  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 246
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 247 PK 252
           P+
Sbjct: 65  PR 66



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 25/30 (83%), Positives = 29/30 (96%)
 Frame = +2

Query: 506 QHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 595
           +HIDFSL SP+GGGRPGRVKRKN++KGQGG
Sbjct: 152 KHIDFSLNSPYGGGRPGRVKRKNMKKGQGG 181


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +1

Query: 94  RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKSCSKVMP 273
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   PK  S V+ 
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPKFDSPVLE 116

Query: 274 F 276
           +
Sbjct: 117 Y 117


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +3

Query: 273 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 452
           +L +L  +G++  K+  L     +    F  RRL   +    +A+ +  A   I Q H+R
Sbjct: 78  ILEKLHNMGLISTKK-NLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVR 136

Query: 453 VRKQVVNIPSFIV 491
           V  +V+  P+F+V
Sbjct: 137 VGPEVIMDPAFLV 149


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 109 KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKSCSKVMPF 276
           K  L Q+   +G+YG   KR+   V         AARE+L +E   PK  S V+ +
Sbjct: 2   KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPKFDSPVLEY 57


>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1003

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -1

Query: 185 LTRHTSRLLRRPYSPMIFNSWSRRAFSKGRRGVTYVFENTDGTLLFTILASSHALLADKN 6
           LTRH+S+   R   P I  S S       RR  +    N+      T+ AS+ A L+D N
Sbjct: 40  LTRHSSQPKLRRDEPSITGSLSNLTLDNSRRAASLAQLNSLKATGKTLSASNLAALSDTN 99


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 474 CSQLACGHEYAFAGSKFWHDGWTSP 400
           C++LA    Y++ G +FW + W+ P
Sbjct: 72  CARLAEQKNYSYFGVQFWGECWSGP 96


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 285 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 431
           L++I   D+K M+ +Y+LGL +E   +R    +++   + K   H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,038,292
Number of Sequences: 59808
Number of extensions: 423658
Number of successful extensions: 1128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)