Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0841
         (671 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD...   160   2e-39
AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA...   160   2e-39
AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p pro...   136   3e-32
AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB...   136   3e-32
X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal prot...   114   9e-26
AY071534-1|AAL49156.1|  181|Drosophila melanogaster RE57564p pro...    38   0.016
AE013599-2494|AAF57847.2|  181|Drosophila melanogaster CG4866-PA...    38   0.016
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA...    32   0.62 
AY069336-1|AAL39481.1|  258|Drosophila melanogaster LD05259p pro...    29   4.4  
AE014297-401|AAF51920.1|  258|Drosophila melanogaster CG10287-PA...    29   4.4  
AF070734-1|AAD09748.1|  218|Drosophila melanogaster Gasp precurs...    29   5.8  

>AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD,
           isoform D protein.
          Length = 195

 Score =  160 bits (388), Expect = 2e-39
 Identities = 77/85 (90%), Positives = 82/85 (96%)
 Frame = +3

Query: 249 QELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 428
           + LF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GLAKSIHHAR+
Sbjct: 70  KRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARV 129

Query: 429 LIRQRHIRVRKQVVNIPSFIVRLDS 503
           LIRQRHIRVRKQVVNIPSF+VRLDS
Sbjct: 130 LIRQRHIRVRKQVVNIPSFVVRLDS 154



 Score =  136 bits (328), Expect = 3e-32
 Identities = 63/70 (90%), Positives = 67/70 (95%)
 Frame = +1

Query: 43  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 222
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 223 LLTLEEKDPK 252
           LLTL+EKD K
Sbjct: 61  LLTLDEKDEK 70



 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = +2

Query: 506 QHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 598
           +HIDFSLKSPFGGGRPGRVKRKNL+K QGGG
Sbjct: 156 KHIDFSLKSPFGGGRPGRVKRKNLKKNQGGG 186


>AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA,
           isoform A protein.
          Length = 195

 Score =  160 bits (388), Expect = 2e-39
 Identities = 77/85 (90%), Positives = 82/85 (96%)
 Frame = +3

Query: 249 QELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 428
           + LF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GLAKSIHHAR+
Sbjct: 70  KRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARV 129

Query: 429 LIRQRHIRVRKQVVNIPSFIVRLDS 503
           LIRQRHIRVRKQVVNIPSF+VRLDS
Sbjct: 130 LIRQRHIRVRKQVVNIPSFVVRLDS 154



 Score =  136 bits (328), Expect = 3e-32
 Identities = 63/70 (90%), Positives = 67/70 (95%)
 Frame = +1

Query: 43  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 222
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 223 LLTLEEKDPK 252
           LLTL+EKD K
Sbjct: 61  LLTLDEKDEK 70



 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = +2

Query: 506 QHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 598
           +HIDFSLKSPFGGGRPGRVKRKNL+K QGGG
Sbjct: 156 KHIDFSLKSPFGGGRPGRVKRKNLKKNQGGG 186


>AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p
           protein.
          Length = 137

 Score =  136 bits (328), Expect = 3e-32
 Identities = 63/70 (90%), Positives = 67/70 (95%)
 Frame = +1

Query: 43  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 222
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 223 LLTLEEKDPK 252
           LLTL+EKD K
Sbjct: 61  LLTLDEKDEK 70



 Score =  128 bits (308), Expect = 9e-30
 Identities = 61/68 (89%), Positives = 65/68 (95%)
 Frame = +3

Query: 249 QELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 428
           + LF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GLAKSIHHAR+
Sbjct: 70  KRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARV 129

Query: 429 LIRQRHIR 452
           LIRQRHIR
Sbjct: 130 LIRQRHIR 137


>AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB,
           isoform B protein.
          Length = 137

 Score =  136 bits (328), Expect = 3e-32
 Identities = 63/70 (90%), Positives = 67/70 (95%)
 Frame = +1

Query: 43  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 222
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 223 LLTLEEKDPK 252
           LLTL+EKD K
Sbjct: 61  LLTLDEKDEK 70



 Score =  128 bits (308), Expect = 9e-30
 Identities = 61/68 (89%), Positives = 65/68 (95%)
 Frame = +3

Query: 249 QELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 428
           + LF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GLAKSIHHAR+
Sbjct: 70  KRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARV 129

Query: 429 LIRQRHIR 452
           LIRQRHIR
Sbjct: 130 LIRQRHIR 137


>X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal protein
           protein.
          Length = 197

 Score =  114 bits (275), Expect = 9e-26
 Identities = 56/70 (80%), Positives = 61/70 (87%)
 Frame = +1

Query: 43  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 222
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGL+  R V  VKY LA+IRK ARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLQQARSV-AVKYALAKIRKVARE 59

Query: 223 LLTLEEKDPK 252
           LLTL+EKD K
Sbjct: 60  LLTLDEKDAK 69



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 36/81 (44%), Positives = 47/81 (58%)
 Frame = +3

Query: 249 QELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 428
           + LF+G +L+RRLVRIGVL     +     G +    L         +AGLAKSIHHAR+
Sbjct: 69  KRLFQGKSLVRRLVRIGVLKSPH-EARLRAGSEDSGLLGASSADAGVQAGLAKSIHHARV 127

Query: 429 LIRQRHIRVRKQVVNIPSFIV 491
           LIRQR   +  +   IPSF+V
Sbjct: 128 LIRQRTFVLASRWSTIPSFVV 148


>AY071534-1|AAL49156.1|  181|Drosophila melanogaster RE57564p
           protein.
          Length = 181

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 21/73 (28%), Positives = 39/73 (53%)
 Frame = +3

Query: 273 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 452
           LL +L  +GV ++ Q+ L+    +    F  RRL   + K  +++ +  A  LI   H+R
Sbjct: 78  LLNKLHAMGVSND-QLTLETAAKISASHFCRRRLPVIMVKLRMSEHLKAATDLIEHGHVR 136

Query: 453 VRKQVVNIPSFIV 491
           V  +++  P+F+V
Sbjct: 137 VGPEMIKDPAFLV 149


>AE013599-2494|AAF57847.2|  181|Drosophila melanogaster CG4866-PA
           protein.
          Length = 181

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 21/73 (28%), Positives = 39/73 (53%)
 Frame = +3

Query: 273 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 452
           LL +L  +GV ++ Q+ L+    +    F  RRL   + K  +++ +  A  LI   H+R
Sbjct: 78  LLNKLHAMGVSND-QLTLETAAKISASHFCRRRLPVIMVKLRMSEHLKAATDLIEHGHVR 136

Query: 453 VRKQVVNIPSFIV 491
           V  +++  P+F+V
Sbjct: 137 VGPEMIKDPAFLV 149


>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
            protein.
          Length = 1958

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 23/82 (28%), Positives = 38/82 (46%)
 Frame = -1

Query: 539  RMEISERSQCVARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQ 360
            R E S +++C+A  Q     W    LL   + PLP  NSG  +  +QA   H  +     
Sbjct: 1076 RREPSAKARCIALSQLGQ--W----LLMRLSQPLPASNSGRANLFQQAVPHHKDVHPKAS 1129

Query: 359  EVLNLQTKHIIEFHLFFIQYSN 294
             V N + K +++  L  +Q+ +
Sbjct: 1130 SVYNPRIKEVLQVLLQALQFKH 1151


>AY069336-1|AAL39481.1|  258|Drosophila melanogaster LD05259p
           protein.
          Length = 258

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 365 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQA 463
           A   DA V  W  +V P C+N + A  +SCP A
Sbjct: 127 AYDRDARVCMWADQV-PECKNEEVANGFSCPAA 158


>AE014297-401|AAF51920.1|  258|Drosophila melanogaster CG10287-PA
           protein.
          Length = 258

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 365 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQA 463
           A   DA V  W  +V P C+N + A  +SCP A
Sbjct: 127 AYDRDARVCMWADQV-PECKNEEVANGFSCPAA 158


>AF070734-1|AAD09748.1|  218|Drosophila melanogaster Gasp precursor
           protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 377 DAGVQSWPGEVHPSCQNFDPAKAYSCPQA 463
           DA V  W  +V P C+N + A  +SCP A
Sbjct: 131 DARVCMWADQV-PECKNEEVANGFSCPAA 158


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,951,118
Number of Sequences: 53049
Number of extensions: 633291
Number of successful extensions: 1794
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1791
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)