Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0841
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   156   2e-38
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    36   0.020
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   3.0  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   4.0  
AC006627-8|AAK85458.1|  276|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rna...    27   9.2  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  156 bits (378), Expect = 2e-38
 Identities = 74/86 (86%), Positives = 82/86 (95%)
 Frame = +3

Query: 246 PQELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 425
           P+ LFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 67  PKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHAR 126

Query: 426 ILIRQRHIRVRKQVVNIPSFIVRLDS 503
           ILI+Q HIRVR+QVV++PSFIVRLDS
Sbjct: 127 ILIKQHHIRVRRQVVDVPSFIVRLDS 152



 Score =  109 bits (262), Expect = 2e-24
 Identities = 50/66 (75%), Positives = 59/66 (89%)
 Frame = +1

Query: 55  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 234
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 235 EEKDPK 252
           E+KDPK
Sbjct: 63  EDKDPK 68



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +2

Query: 506 QHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 598
           +HIDFSL+SP+GGGRPGRVKR+ LRKG G G
Sbjct: 154 KHIDFSLQSPYGGGRPGRVKRRTLRKGDGAG 184


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +3

Query: 357 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGNTLT 518
           F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S + +T
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMIT 158


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 311 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 481
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 474 CSQLACGHEYAFAGSKFWHDG 412
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 477 GCSQLACGHEYAFAGSKFWH 418
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>AC006627-8|AAK85458.1|  276|Caenorhabditis elegans Hypothetical
           protein E01A2.1 protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +3

Query: 240 EGPQELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 419
           +G  E  E N    ++  +    EK ++   +  + + DF  R+L+T +    +  SI+H
Sbjct: 127 DGESEEDENNRWFEKVKPLYTYMEKLVETSEIASIGVSDFSARQLKTIIDHFDVKPSINH 186

Query: 420 ARI 428
            R+
Sbjct: 187 VRL 189


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 89  VTYVFENTDGTLLFTILASSH 27
           + YVF+N+D  LLF IL   H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +3

Query: 345 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 470
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +3

Query: 345 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 470
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341


>AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 1, isoform b protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 23/97 (23%), Positives = 38/97 (39%)
 Frame = +3

Query: 309 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
           EK    +Y+   + EDF +   +  +FK G  KS   AR +I    + V  +  +  +  
Sbjct: 427 EKMAIREYLENKQTEDFAKIAAERGIFKIGEIKSYQTARPIIEDDDVDVESEEEDYGTEF 486

Query: 489 VRLDSGNTLTSL*NLHSVEVVLDVSRGRTSARDRVAE 599
             L+    +  + +    EV LD    R    D   E
Sbjct: 487 EMLEVVERMPPVSSTLHTEVDLDAVWERDGGSDSERE 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,428,731
Number of Sequences: 27780
Number of extensions: 311021
Number of successful extensions: 890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)