Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0841
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 136 9e-33
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 133 9e-32
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 38 0.006
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 29 3.7
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 3.7
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 4.9
At5g41310.1 68418.m05020 kinesin motor protein-related 28 4.9
At1g43730.1 68414.m05028 hypothetical protein 28 4.9
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 8.6
At5g28615.1 68418.m03493 hypothetical protein 27 8.6
At5g03320.1 68418.m00283 protein kinase, putative similar to ser... 27 8.6
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 136 bits (330), Expect = 9e-33
Identities = 64/88 (72%), Positives = 77/88 (87%)
Frame = +3
Query: 240 EGPQELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 419
+ P+ +FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH
Sbjct: 67 KSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126
Query: 420 ARILIRQRHIRVRKQVVNIPSFIVRLDS 503
+R+LIRQRHIRV KQ+VNIPSF+VRLDS
Sbjct: 127 SRVLIRQRHIRVGKQLVNIPSFMVRLDS 154
Score = 99 bits (238), Expect = 1e-21
Identities = 42/61 (68%), Positives = 54/61 (88%)
Frame = +1
Query: 70 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 249
+ KT+ PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10 YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69
Query: 250 K 252
+
Sbjct: 70 R 70
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/35 (65%), Positives = 27/35 (77%), Gaps = 4/35 (11%)
Frame = +2
Query: 506 QHIDFSLKSPFGGGRPGRVKRKN----LRKGQGGG 598
+HIDF+L SPFGGGRPGRVKR+N +K GGG
Sbjct: 156 KHIDFALTSPFGGGRPGRVKRRNEKSASKKASGGG 190
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 133 bits (322), Expect = 9e-32
Identities = 62/88 (70%), Positives = 77/88 (87%)
Frame = +3
Query: 240 EGPQELFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 419
+ P+ +FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH
Sbjct: 67 KNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126
Query: 420 ARILIRQRHIRVRKQVVNIPSFIVRLDS 503
AR+LIRQRHIRV +Q+VNIPSF+VR++S
Sbjct: 127 ARVLIRQRHIRVGRQLVNIPSFMVRVES 154
Score = 103 bits (246), Expect = 1e-22
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +1
Query: 43 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 222
MVN R + KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60
Query: 223 LLTLEEKDPK 252
LLTL+EK+P+
Sbjct: 61 LLTLDEKNPR 70
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +2
Query: 506 QHIDFSLKSPFGGGRPGRVKRKNLRKG 586
+H+DFSL SPFGGGRPGRVKR+N R G
Sbjct: 156 KHVDFSLTSPFGGGRPGRVKRRNERAG 182
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +3
Query: 273 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 452
LL +L +GV+ ++ L L + F RRL T + A+ A I Q H+R
Sbjct: 77 LLEKLYNMGVIPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVR 135
Query: 453 VRKQVVNIPSFIVRLDSGNTLT 518
V + + P+F+V + + +T
Sbjct: 136 VGPETITDPAFLVTRNMEDFIT 157
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/81 (22%), Positives = 31/81 (38%)
Frame = +2
Query: 362 GASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPIIYCAPGLWQHIDFSLKSPFG 541
GA + G G+ S + + + CP SC + + + G+ + +
Sbjct: 111 GAEETNGGAGRGRGQADSSAKPWQQDGDWMCPNTSCTN-VNFAFRGVCNRCGTARPAGAS 169
Query: 542 GGRPGRVKRKNLRKGQGGGAP 604
GG G + + G GGAP
Sbjct: 170 GGSMGAGRGRGRGGGADGGAP 190
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 76 KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 192
K ++ PRR P + Q E K EYG RN E W + T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 314 TDETRLCAWSED*GLLGASSADAGVQSW 397
T E CAWS LL + S DA + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 376 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHHLL 489
RRR S A S + F G F+ AS++ TSHH L
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHHSL 178
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 432 SKFWHDGWTSPGQL 391
+KFWHD WT G L
Sbjct: 77 AKFWHDNWTGHGPL 90
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 282 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 383
RL + VLDE++ +D LG+K ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506
>At5g28615.1 68418.m03493 hypothetical protein
Length = 149
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 432 SKFWHDGWTSPGQL 391
+KFWHD WT G L
Sbjct: 9 AKFWHDDWTGLGPL 22
>At5g03320.1 68418.m00283 protein kinase, putative similar to
serine/threonine-protein kinase NAK [Arabidopsis
thaliana] SWISS-PROT:P43293
Length = 420
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -1
Query: 188 YLTRHTSRLLRRPYSPMIFNSWSRRA--FSKGRRGVTYVFENTDGTLLFTILASSHALLA 15
Y+ + P SP + +W R RG+TY+ E D ++F SS+ LL
Sbjct: 166 YMPNQSVEFHLSPRSPTVL-TWDLRLRIAQDAARGLTYLHEEMDFQIIFRDFKSSNILL- 223
Query: 14 DKN 6
D+N
Sbjct: 224 DEN 226
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,763,090
Number of Sequences: 28952
Number of extensions: 294602
Number of successful extensions: 868
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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