Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0840
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615...    33   0.29 
05_07_0139 - 27968816-27968890,27969065-27969456,27969558-279696...    29   4.7  
01_06_0168 + 27165323-27165373,27166659-27167067,27167666-271677...    29   4.7  

>06_02_0369 -
           15260013-15260273,15260367-15260516,15261518-15261577,
           15262114-15262241,15262559-15262654,15262655-15263039
          Length = 359

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -2

Query: 595 RQYHRYFLIQMIKALIFVATGIQFH*FILIYLFYKVKIRYVILQYLKK*YT*NNKGTFH 419
           R+++++FL QM++AL ++ TGI F  F+  +      +   +  Y+   +T N    +H
Sbjct: 109 REHYQFFLYQMLRALKYIHTGINFT-FLKSHFLACASVVVCLYSYITT-FTLNQANVYH 165


>05_07_0139 -
           27968816-27968890,27969065-27969456,27969558-27969640,
           27969841-27969933,27970012-27970223,27970604-27970753,
           27971195-27971254,27971369-27971496,27972008-27972416,
           27973514-27973570
          Length = 552

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -2

Query: 595 RQYHRYFLIQMIKALIFVATGIQFH 521
           +++H++FL QM++AL ++ T   +H
Sbjct: 136 KEHHQFFLYQMLRALKYIHTANVYH 160


>01_06_0168 +
           27165323-27165373,27166659-27167067,27167666-27167793,
           27167905-27167964,27169126-27169275,27169358-27169513,
           27169643-27169854,27169983-27170084,27170351-27170430,
           27170515-27170939
          Length = 590

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -2

Query: 595 RQYHRYFLIQMIKALIFVATGIQFH 521
           +++H++FL QM++AL ++ T   +H
Sbjct: 134 KEHHQFFLYQMLRALKYIHTANVYH 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,615,531
Number of Sequences: 37544
Number of extensions: 197568
Number of successful extensions: 244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)