Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0840
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81027-1|CAB02686.1|  566|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U58758-13|AAB93427.1|  565|Caenorhabditis elegans Hypothetical p...    28   5.6  
AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane...    28   5.6  
Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z81027-1|CAB02686.1|  566|Caenorhabditis elegans Hypothetical
           protein AH10.1 protein.
          Length = 566

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = -2

Query: 589 YHRYFLIQMIKALIFVATGIQFH*FILIYL-----FYKVKIRYVI 470
           YH Y L  M++ ++  ATG+ F  F  I +     FYKVK+ +++
Sbjct: 247 YHAYGLNTMLETILLGATGLVFKKFDTIVMLNRIKFYKVKLAWLV 291


>Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical
           protein F56F3.2b protein.
          Length = 685

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 361 NSLVIFCIFTYSIFRIFAYNGKYLYC--FMYIIF 456
           N L +   F Y + R+F +   Y+ C  FMY+IF
Sbjct: 339 NILTLRSAFDYILMRLFRFWPAYIVCVLFMYVIF 372


>Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical
           protein F56F3.2a protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 361 NSLVIFCIFTYSIFRIFAYNGKYLYC--FMYIIF 456
           N L +   F Y + R+F +   Y+ C  FMY+IF
Sbjct: 339 NILTLRSAFDYILMRLFRFWPAYIVCVLFMYVIF 372


>U58758-13|AAB93427.1|  565|Caenorhabditis elegans Hypothetical
           protein ZK1127.2 protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -2

Query: 589 YHRYFLIQMIKALIFVATGIQFH*FILIYL-----FYKVKIRYVI 470
           YH Y L  M + ++   TGI F  F  I +     FYKVK+ +++
Sbjct: 247 YHAYGLNTMFETILLGMTGIVFKKFDTIVMLNRIKFYKVKLAWLV 291


>AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane
           protein NDG-4 protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 361 NSLVIFCIFTYSIFRIFAYNGKYLYC--FMYIIF 456
           N L +   F Y + R+F +   Y+ C  FMY+IF
Sbjct: 339 NILTLRSAFDYILMRLFRFWPAYIVCVLFMYVIF 372


>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 648 PFQASLSQEFLEHSYMRKDNITDIS*SR 565
           P+   L++EF +H  MRK+ I  I  +R
Sbjct: 234 PYSRKLTREFYDHDLMRKNRIGSIEIAR 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,579,490
Number of Sequences: 27780
Number of extensions: 229930
Number of successful extensions: 470
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)