Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0840
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain...    31   0.97 
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    31   0.97 
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat...    30   1.3  
At3g14720.1 68416.m01861 mitogen-activated protein kinase, putat...    29   3.0  
At5g22490.1 68418.m02625 condensation domain-containing protein ...    28   6.8  

>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
           protein similar to transcription co-repressor Sin3
           [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1377

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 365 LFCEHSIKTSCK*SSILIYIFCLTITYKK*LIQRKDTKNLVS 240
           LFCE   +  C       ++ CL + +   +IQRKD +NLVS
Sbjct: 336 LFCEKVKERLCSQDDYQAFLKCLNM-FSNGIIQRKDLQNLVS 376


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
           protein low similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -1

Query: 410 NIRNML*VK-IQKITKLFCEHSIKTSCK*SSILIYIFCLTITYKK*LIQRKDTKNLVS 240
           N++N+  V  + K   +FCE      C       ++ CL I +   +IQRKD +NLVS
Sbjct: 330 NLKNVYFVLGMYKQAFVFCEKVKDRLCSQDDYQTFLKCLNI-FSNGIIQRKDLQNLVS 386


>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK18) mitogen-activated protein
           kinase (MAPK)(AtMPK18), PMID:12119167
          Length = 603

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 595 RQYHRYFLIQMIKALIFVATGIQFH 521
           R++H++FL QM++AL F+ T   +H
Sbjct: 113 REHHQFFLYQMLRALKFMHTANVYH 137


>At3g14720.1 68416.m01861 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK19) identical to mitogen-activated
           protein kinase (MAPK)(AtMPK19), PMID:12119167;
          Length = 586

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -2

Query: 595 RQYHRYFLIQMIKALIFVATGIQFH 521
           R++H++FL QM++AL ++ T   +H
Sbjct: 113 REHHQFFLYQMLRALKYMHTANVYH 137


>At5g22490.1 68418.m02625 condensation domain-containing protein
           contains Pfam profile PF00668: Condensation domain
          Length = 482

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 343 LIECSQNSLVIFCIFTYSIFRIFAYNGKYLYCFMYIIFLN 462
           +I+  +NSL+ + I+T+S F I A+       F   I LN
Sbjct: 355 MIDRKKNSLITYIIYTFSEFVIKAFGINVAVAFQRKIMLN 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,329,844
Number of Sequences: 28952
Number of extensions: 192195
Number of successful extensions: 276
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)