Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0839
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D9AF71 Cluster: PREDICTED: hypothetical protein;...    37   0.53 
UniRef50_Q9FFK8 Cluster: Similarity to unknown protein; n=1; Ara...    34   3.8  
UniRef50_A7S792 Cluster: Predicted protein; n=3; Nematostella ve...    33   5.0  
UniRef50_Q978Y5 Cluster: TVG1320830 protein; n=3; Thermoplasma|R...    33   5.0  
UniRef50_A7T8W3 Cluster: Predicted protein; n=1; Nematostella ve...    33   6.6  
UniRef50_P30318 Cluster: DNA polymerase; n=9; Nucleopolyhedrovir...    33   6.6  

>UniRef50_UPI0000D9AF71 Cluster: PREDICTED: hypothetical protein;
           n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
           - Macaca mulatta
          Length = 445

 Score = 36.7 bits (81), Expect = 0.53
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = -2

Query: 365 IKYCIYF*-CGLLSFICSFLKIKDCLNLTIGALCLLVCLSILKIVMCNCLCL 213
           I  CIY   C  +S IC+ + I  C+++ I  +C+ +C+S+  I +C C+C+
Sbjct: 246 ISMCIYICICICISIICTCVCICICISMCI-YICICICISMC-IYICICICI 295



 Score = 36.3 bits (80), Expect = 0.71
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -2

Query: 365 IKYCIYF*CGLLSFICSFLKIKDCLNLTIGALCLLVCLSILKIVMCNCLCL 213
           I  CIY    +   +C ++ I  C+++    +C+ +C+S+  I +C C+C+
Sbjct: 234 ISMCIYISICICISMCIYICICICISIICTCVCICICISMC-IYICICICI 283



 Score = 35.5 bits (78), Expect = 1.2
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = -2

Query: 365 IKYCIYF*CGLLSFICSFLKIKDCLNLTIGALCLLVCLSILKIVMCNCLCL 213
           I  CIY    +   +C ++ I  C+++ I  +C+ +C+S+  I +C C+C+
Sbjct: 283 ISMCIYICICICISMCIYISICICISMCI-YICICICISMC-IYICICICI 331



 Score = 34.3 bits (75), Expect = 2.9
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = -2

Query: 365 IKYCIYF*CGLLSFICSFLKIKDCLNLTIGALCLLVCLSILKIVMCNCLCL 213
           I  CIY    +   +C ++ I  C+++ I  +C+ +C+S+  I +C C+C+
Sbjct: 307 ISMCIYICICICISMCIYICICICISMCI-YICICICISMC-IYICICICI 355


>UniRef50_Q9FFK8 Cluster: Similarity to unknown protein; n=1;
           Arabidopsis thaliana|Rep: Similarity to unknown protein
           - Arabidopsis thaliana (Mouse-ear cress)
          Length = 820

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 341 CGLLSFICSFLKIKDCLNLTIGALCLLVCLSILKIVMCNCLCLEK 207
           CG    IC F+ I D +++T   L + +   I  +V C CL L+K
Sbjct: 636 CGKKVSICQFISIWDAVSVTSEILLVSILSWIKVVVRCKCLTLKK 680


>UniRef50_A7S792 Cluster: Predicted protein; n=3; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 225

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -2

Query: 368 IIKYCIYF*CGLLSFICSFL-----KIKDCLNLTIGALCLLVCLSILKIVMCNCLCLEK 207
           + K C +  C L+S IC+FL     KI   L L +  +C  +CL + KI    CL + K
Sbjct: 72  VSKICAFL-CLLVSKICAFLCLLVSKICAFLCLLVSKICAFLCLPVSKICAFLCLLVSK 129



 Score = 33.1 bits (72), Expect = 6.6
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -2

Query: 368 IIKYCIYF*CGLLSFICSFL-----KIKDCLNLTIGALCLLVCLSILKIVMCNCLCLEK 207
           + K C +  C L+S IC+FL     KI   L L +  +C  +CL + KI    CL + K
Sbjct: 83  VSKICAFL-CLLVSKICAFLCLLVSKICAFLCLPVSKICAFLCLLVSKICAFLCLLVSK 140



 Score = 32.7 bits (71), Expect = 8.7
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -2

Query: 368 IIKYCIYF*CGLLSFICSFL-----KIKDCLNLTIGALCLLVCLSILKIVMCNCLCLEK 207
           + K C +  C L+S +C+FL     KI   L L +  +C  +CL + KI    CL + K
Sbjct: 39  VSKICAFL-CLLVSKVCAFLCLLVSKICAFLCLLVSKICAFLCLLVSKICAFLCLLVSK 96



 Score = 32.7 bits (71), Expect = 8.7
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -2

Query: 368 IIKYCIYF*CGLLSFICSFL-----KIKDCLNLTIGALCLLVCLSILKIVMCNCLCLEK 207
           + K C +  C L+S IC+FL     KI   L L +  +C  +CL + K+    CL + K
Sbjct: 116 VSKICAFL-CLLVSKICAFLCLLVSKICAFLCLPVSKICAFLCLLVSKVCAFLCLIVSK 173



 Score = 32.7 bits (71), Expect = 8.7
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -2

Query: 368 IIKYCIYF*CGLLSFICSFL-----KIKDCLNLTIGALCLLVCLSILKIVMCNCLCLEK 207
           + K C +  C ++S IC+FL     KI   L L +  +C  +CL + KI    CL + K
Sbjct: 160 VSKVCAFL-CLIVSKICAFLCLPVSKICAFLCLLVSKICAFLCLPVSKICAFLCLLVSK 217


>UniRef50_Q978Y5 Cluster: TVG1320830 protein; n=3; Thermoplasma|Rep:
           TVG1320830 protein - Thermoplasma volcanium
          Length = 324

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 44  FYENRWSRFRDSDLYIYIYTRIARLKV 124
           +Y  RWS++ D  LY+Y YT    LK+
Sbjct: 273 YYLRRWSKYEDGKLYLYFYTTDDLLKI 299


>UniRef50_A7T8W3 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 129

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 368 IIKYCIYF*CGLLSFICSFLKIKDCLNLTIGALCLLVCLSILKIVMCNCLCL 213
           ++++ + + C +L  IC       CL L +  LC   C   LK+ MC C  L
Sbjct: 74  MVRWLLEYMCTVLKCICCMCMYFMCLRLRLCILC-EACAKCLKVFMCMCSVL 124


>UniRef50_P30318 Cluster: DNA polymerase; n=9;
           Nucleopolyhedrovirus|Rep: DNA polymerase - Lymantria
           dispar multicapsid nuclear polyhedrosis virus (LdMNPV)
          Length = 1014

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 684 TAIKI*VQTRTAHTMNSNWTLF*LILMS*MNGLIMFEHKKYC 559
           TAI+  VQ     T+N +W  + + L + M  LI+ + KKYC
Sbjct: 708 TAIRSIVQDHVCKTLNDSWCGYKMSLENIMLSLILLKKKKYC 749


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,292,446
Number of Sequences: 1657284
Number of extensions: 12204689
Number of successful extensions: 26707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26660
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)