Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0839
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   2.6  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.5  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   7.8  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 26  NPLYTKFYENRWSRFRDSDLYIYIYTRIARLKV*DTNLIAFSF*LINK 169
           +PL  + Y++ W+  R   L ++      RLK  DT ++A    ++N+
Sbjct: 391 SPLKARVYDSDWNWARQDALKMFFDIIFGRLKHVDTEIVARCISVMNR 438


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 522 WVFFNTADSQIGYIWYMWSIVFLSLEIKQLKFQ 424
           +VF+ T+   I Y+ Y+W I+  SL++ + K Q
Sbjct: 314 YVFYITSTFWIIYLLYVWLILPESLDVSESKEQ 346


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 661 NSDCPYDE*QLDAFLININVMNEWIDNV 578
           NSDCP+ E +      NIN     ++N+
Sbjct: 590 NSDCPHKEGECVGSFCNINAKGSSLNNI 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,902
Number of Sequences: 5004
Number of extensions: 59144
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)