Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0839
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602...    29   4.6  
01_01_0501 - 3682100-3682148,3682263-3682341,3682434-3682511,368...    28   8.0  

>08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,
            6027187-6027258,6027354-6027425,6027784-6027855,
            6027980-6028051,6028134-6028205,6028483-6028554,
            6028791-6028865,6028970-6029041,6029134-6029199,
            6029267-6029332,6029409-6029453,6029542-6029606,
            6029697-6030076,6030455-6030653,6030725-6030883,
            6030966-6031084,6031156-6031200,6031226-6031791,
            6031871-6032021,6032117-6032454,6033702-6033765,
            6034329-6034370,6035572-6035575,6035853-6036039,
            6037252-6037323,6037687-6037758,6037867-6037938,
            6038019-6038090,6038651-6038725,6038815-6038886,
            6038988-6039053,6039163-6039228,6039348-6039392,
            6039469-6039533,6039615-6039994,6040070-6040202,
            6040354-6040512,6040599-6040717,6040805-6041015,
            6041155-6041386,6041469-6041619,6041725-6042084
          Length = 1952

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -3

Query: 445  D*TIKIPKFIGSYYHTNNKLLHNLYVSLNTA---FTSDAGFCLLSVRFSRL 302
            D T KIP + GS+ +  + +L N  +S N     F+  AG  LL + F+ +
Sbjct: 1224 DLTGKIPDYFGSFPNLQDLILRNCKISDNLGTVNFSKLAGLTLLDLSFNNI 1274


>01_01_0501 -
           3682100-3682148,3682263-3682341,3682434-3682511,
           3682770-3682866,3682944-3683029,3683310-3683381,
           3683451-3683520,3683988-3684110,3684212-3684370,
           3684443-3684730,3685652-3685725,3686107-3686344
          Length = 470

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 317 SFLKIKDCLNLTIGALCLLVCLSILKIVMCNCLC 216
           S +  K  LNL +  +  L+C+S    +MC C C
Sbjct: 161 SIMASKKDLNLALILMHALLCMSTFTYLMCICAC 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,052,142
Number of Sequences: 37544
Number of extensions: 287634
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)