Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0839
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_17183| Best HMM Match : DUF348 (HMM E-Value=5.3)                    29   4.7  
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      28   8.2  

>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 281 IGALCLLVCLSILKIVMCNCLC 216
           + ++C+L+C    ++VMC C C
Sbjct: 304 VRSMCVLLCAQCRRVVMCACAC 325


>SB_17183| Best HMM Match : DUF348 (HMM E-Value=5.3)
          Length = 334

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 307 LRNEQIKDKSPHQK*MQYLMIRI-NYVKVC 393
           L+  Q  DKSPH++  ++ ++RI +Y KVC
Sbjct: 219 LKKHQGDDKSPHKQSKRFPLVRISSYKKVC 248


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -2

Query: 350 YF*CGLL--SFICSFLKIKDCLNLTIGALCLLVC-LSILKIVMCNCLCL 213
           Y  C LL   ++C  L + D L  T+  +C L C L ++  + C  L +
Sbjct: 183 YLCCSLLVMGYLCCTLLVMDYLCFTLLVMCYLCCTLLVMDYLCCTLLVM 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,548,244
Number of Sequences: 59808
Number of extensions: 375470
Number of successful extensions: 712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)