Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0839
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100655-2|AAK68684.2|  366|Caenorhabditis elegans Map kinase ac...    28   5.5  
AF100655-1|AAC68944.1|  443|Caenorhabditis elegans Map kinase ac...    28   5.5  

>AF100655-2|AAK68684.2|  366|Caenorhabditis elegans Map kinase
           activated protein kinaseprotein 2, isoform b protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 189 ICSDAIFL*T*TIAHNDLQNGKTY*KTKSSNR*IK-TIFNLEKRTDKRQKPASEVNAVFN 365
           ICS    L   +IAH DL+       T +SN  +K T F   K+TD+  +P     A F 
Sbjct: 119 ICSAVAHLHRMSIAHRDLKPENLLYVTTASNAALKLTDFGFAKKTDE-SEPQGLKTACFT 177

Query: 366 DTY 374
             Y
Sbjct: 178 PYY 180


>AF100655-1|AAC68944.1|  443|Caenorhabditis elegans Map kinase
           activated protein kinaseprotein 2, isoform a protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 189 ICSDAIFL*T*TIAHNDLQNGKTY*KTKSSNR*IK-TIFNLEKRTDKRQKPASEVNAVFN 365
           ICS    L   +IAH DL+       T +SN  +K T F   K+TD+  +P     A F 
Sbjct: 196 ICSAVAHLHRMSIAHRDLKPENLLYVTTASNAALKLTDFGFAKKTDE-SEPQGLKTACFT 254

Query: 366 DTY 374
             Y
Sbjct: 255 PYY 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,315,019
Number of Sequences: 27780
Number of extensions: 312442
Number of successful extensions: 653
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)