Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0839
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.7  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.3  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 546 IKIIHNIFYVQTLSIHSFMTLILIKKASNC 635
           I  IH+IF +  + I+S  T+  +    NC
Sbjct: 7   IMFIHSIFLILIIFIYSNETIAQVTDDENC 36


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +2

Query: 158 LINKYKFLKRNMFRCYFSLDI--NNCT*RSSKWK 253
           L +KY   KRN F   F LD   N C  +  K K
Sbjct: 371 LFSKYDAKKRNFFITMFDLDFLTNACKKKDDKPK 404


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 546 IKIIHNIFYVQTLSIHSFMTLILIKKASNC 635
           I  IH+IF +  + I+S  T+  +    NC
Sbjct: 7   IMFIHSIFLILIIFIYSNETIAQVTDDENC 36


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 406 YHTNNKLLHNLYVSLNTAFTSD 341
           Y  NN++LH L+ S    F  D
Sbjct: 94  YKWNNQILHILWTSYKKVFMKD 115


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 406 YHTNNKLLHNLYVSLNTAFTSD 341
           Y  NN++LH L+ S    F  D
Sbjct: 77  YKWNNQILHILWTSYKKVFMKD 98


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 261 SMSFHFEDRYVQLFMSREK*HLNILRF 181
           +++F F+D+Y Q+F+     +   LR+
Sbjct: 88  ALNFAFKDKYKQVFLGGVDKNTQFLRY 114


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 261 SMSFHFEDRYVQLFMSREK*HLNILRF 181
           +++F F+D+Y Q+F+     +   LR+
Sbjct: 88  ALNFAFKDKYKQVFLGGVDKNTQFLRY 114


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 524 FYAKSYPYKNHSQ 562
           FY+ SYP +N SQ
Sbjct: 22  FYSASYPPQNRSQ 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,101
Number of Sequences: 438
Number of extensions: 4139
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)