Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0838
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.6  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   4.5  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   5.9  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   7.9  

>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 446 NSARDRYTVPWGFNGFINYI 387
           NS  DRYT+P+   G I+Y+
Sbjct: 339 NSGSDRYTIPFFLQGNIDYV 358


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 644 FHIILFLLDYVVYFPF 691
           FH++LF+L YV+ +PF
Sbjct: 21  FHLVLFVLSYVLGWPF 36


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 7   EHLFPARFHISPDRCSLVAAAAPHLET*ICIFLL 108
           E  +  +FHISPD    +  A  H    +C  LL
Sbjct: 593 ERYYEQKFHISPDEPEKIREAVKHYVHGLCWVLL 626


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 540 IKMLSYLSH--VTVDNYKSESQTLYWPGISK*TWFVHSIL 653
           I +  YL    V++ N  S S+ ++W  I+   W+  SIL
Sbjct: 288 IDLFGYLQKKDVSIKNLSSSSKYIFWLAIATLPWYNWSIL 327


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 271 YLRVTSSATSXDINLDYFSNKAK 339
           Y+RV S+    +INL YF + AK
Sbjct: 505 YVRVRSNMAVSNINLGYFEDAAK 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,689
Number of Sequences: 5004
Number of extensions: 51569
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)